Tue Aug 14 00:13:04 2018
bin/pencil-test --use-pc_auto-test --auto-test-options='--max-level=3,--config-files=GNU-GCC_MPI+GNU-GCC_debug' --pencil-home='/home/pencil/testing' --nice=15 --clean --short --local --html
testing/samples/no-modules: (1/72)
Compiling.. [double] ok 00:51
Starting.. ok 00:00
Running.. ok 00:00
Validating results.. ok
Time used: 00:51 = 00:51 + 00:00
testing/samples/most-modules: (2/72)
Compiling.. ok 02:12
Starting.. ok 00:01
Running.. not ok: 00:03
hostname = lorraine
Non-MPI run
1 CPU
lparticles = 1
lpointmasses = 1
Subcommand: run
Revision: Last Changed Rev: 75984
Tue Aug 14 00:16:09 2018
Running 'env MODULE_PREFIX=__ MODULE_INFIX=_MOD_ MODULE_SUFFIX= ./src/run.x'...
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
The verbose level is ip= 14 (ldebug= F )
This is a 3-D run
nxgrid, nygrid, nzgrid= 32 32 32
Lx, Ly, Lz= 0.128000006 0.128000006 0.128000006
Vbox= 2.09715241E-03
WARNING: input_persistent_interstellar: t_next_SNI from run.in overwritten. Set l_persist_overwrite_tSNI=T to update
input_persistent_interstellar: lSNI F t_next_SNI 0.00000000E+00
input_persistent_interstellar: lSNII T t_next_SNII 0.00000000E+00
WARNING: input_persistent_interstellar: t_next_SNII from run.in overwritten. Set l_persist_overwrite_tSNII=T to update
input_persistent_interstellar: lSNI F t_next_SNI 0.00000000E+00
input_persistent_interstellar: lSNII T t_next_SNII 0.00000000E+00
WARNING: input_persistent_interstellar: x_cluster from run.in overwritten. Set l_persist_overwrite_xcluster=T to update
input_persistent_interstellar: lSNI F t_next_SNI 0.00000000E+00
input_persistent_interstellar: lSNII T t_next_SNII 0.00000000E+00
WARNING: input_persistent_interstellar: y_cluster from run.in overwritten. Set l_persist_overwrite_ycluster=T to update
input_persistent_interstellar: lSNI F t_next_SNI 0.00000000E+00
input_persistent_interstellar: lSNII T t_next_SNII 0.00000000E+00
WARNING: input_persistent_interstellar: z_cluster from run.in overwritten. Set l_persist_overwrite_zcluster=T to update
input_persistent_interstellar: lSNI F t_next_SNI 0.00000000E+00
input_persistent_interstellar: lSNII T t_next_SNII 0.00000000E+00
WARNING: input_persistent_interstellar: t_cluster from run.in overwritten. Set l_persist_overwrite_tcluster=T to update
input_persistent_interstellar: lSNI F t_next_SNI 0.00000000E+00
input_persistent_interstellar: lSNII T t_next_SNII 0.00000000E+00
WARNING: input_persistent_interstellar: lSNI from run.in overwritten. Set l_persist_overwrite_lSNI=T to update
input_persistent_interstellar: lSNI F t_next_SNI 0.00000000E+00
input_persistent_interstellar: lSNII T t_next_SNII 0.00000000E+00
WARNING: input_persistent_interstellar: lSNII from run.in overwritten. Set l_persist_overwrite_lSNII=T to update
input_persistent_interstellar: lSNI F t_next_SNI 0.00000000E+00
input_persistent_interstellar: lSNII T t_next_SNII 0.00000000E+00
input_persistent_interstellar: lSNI F t_next_SNI 0.00000000E+00
input_persistent_interstellar: lSNII T t_next_SNII 0.00000000E+00
input_persistent_forcing: 0.00000000E+00 0.00000000E+00 0.00000000E+00 -10.0000000
input_persistent_interstellar: lSNI F t_next_SNI 0.00000000E+00
input_persistent_interstellar: lSNII T t_next_SNII 0.00000000E+00
input_persistent_forcing: 0.00000000E+00 0.00000000E+00 0.00000000E+00 -10.0000000
units_general: unit_velocity= 97781.229948950713
units_general: unit_density= 1.6728000000000004E-024
units_general: unit_length= 3.0856775800000002E+021
units_general: unit_magnetic= 4.4831415428248343E-007
initialize_eos: ENTER
initialize_gravity: no x-gravity
initialize_gravity: no y-gravity
initialize_gravity: constant gravz= 0.00000000E+00
diffusion: nothing (i.e. no mass diffusion)
initialize_energy: cs2top,cs2cool= 3.90849994E+37 0.00000000E+00
initialize_energy: now set cs2cool=cs2top
initialize_energy: nheatc_max,iheatcond= 4 nothing nothing nothing nothing
heat conduction: nothing
resistivity: constant eta
WARNING: initialize_magnetic: Resistivity coefficient eta is zero!
lalpha_aniso= F
lalpha_tensor= F
initialize_magn_mf: lweyl_gauge= F
calc_angle_weights: correction_factor = 0.333333343
initialize_radiation: ndir = 2
initialize_dustvelocity: dust_chemistry = nothing
recalculated: md0= 1.00000000
initialize_dustvelocity: ad= 0.620350480
initialize_dustvelocity: doing nothing
initialize_dustvelocity: dust geometry = sphere
initialize_dustdensity: ldustcoagulation,ldustcondensation = F F
initialize_dustdensity: ldustcoagulation_simplified,ldustcondensation_simplified = F F
initialize_dustdensity: ldustcoagulation,ldustcondensation = F F
advec_ddensity: plain vanilla scheme
initialize_dustdensity: diffnd= 0.00000000E+00
dust diffusion: nothing
gammacr1= 0.333333373
WARNING: initialize_cosmicray: using obsolescent parameters Kpara and Kperp! In the future, please use K_para and K_perp instead.
WARNING: initialize_cosmicrayflux: parameter tau was set to zero!
WARNING: initialize_cosmicrayflux: using obsolescent parameters kpara and kperp!Please set K_para/K_perp at the Cosmicray module instead.
initialize_interstellar: t_next_SNI 0.00000000E+00
initialize_interstellar: solar_mass (code) = 4.04705496E-08
initialize_interstellar: eampl_SN, kampl_SN = 0.00000000E+00 0.00000000E+00
initialize_interstellar: WSW cooling fct
initialize_interstellar: unit_Lambda 1.81122293E+17
initialize_interstellar: unit_Gamma 3.02981391E-07
initialize_interstellar: t_interval_SNI, SNI rate = 1.52619993E-02 3999.15820
initialize_interstellar: average_SNI_heating = 0
initialize_interstellar: average_SNII_heating =0
initialize_interstellar: t_next_SNI, t_next_SNII= 0.00000000E+00 0.00000000E+00
initialize_shock: prenormalised shock_factor sum= 1.00000000
initialize_particles: dust-to-gas ratio eps_dtog= 1.00000000
initialize_particles: mass per constituent particle mpmat= 0.00000000E+00
initialize_particles: mass per superparticle mp_swarm = 4.01060570E-05
initialize_particles: number density per superparticle np_swarm= 0.00000000E+00
initialize_particles: mass density per superparticle rhop_swarm= 626.657043
initialize particles: set minimum collisional time-scale equal to two times the Courant time-step.
initialize_particles_map: selected cloud-in-cell for particle-mesh method.
initialize_particles_radius: mass per dust grain mpmat= 0.00000000E+00
pencil_consistency_check: checking pencil case
dnpswarm_dt_pencil: Calculate dnpswarm_dt
At line 274 of file particles_selfgravity.f90 dxxp_dt: Calculate dxxp_dt
dxxp_dt: Particles boundary condition bcpx=p
dxxp_dt: Particles boundary condition bcpy=p
dxxp_dt: Particles boundary condition bcpz=p
dxxp_dt: Set rate of change of particle position equal to particle velocity.
dvvp_dt: Calculate dvvp_dt
dvvp_dt: Calculating gravity
dvvp_dt: No gravity in x-direction.
dvvp_dt: No gravity in z-direction.
dvvp_dt: No radial gravity
dvvp_dt_selfgrav: add self-gravity
Fortran runtime warning: An array temporary was created for argument 'xxp' of procedure 'interpolate_linear_range'
At line 274 of file particles_selfgravity.f90
Fortran runtime warning: An array temporary was created for argument 'inear' of procedure 'interpolate_linear_range'
At line 1085 of file pointmasses.f90 dvvq_dt_pointmasses: Calculate dvvq_dt_pointmasses
Fortran runtime warning: An array temporary was created for argument 'xxq' of procedure 'get_evr'
At line 1043 of file pointmasses.f90 dvvp_dt_pointmasses: Finished dvvp_dt_pointmasses
Fortran runtime warning: An array temporary was created for argument 'fp_pt' of procedure 'gravity_pointmasses'
At line 1043 of file pointmasses.f90
Fortran runtime warning: An array temporary was created for argument 'dfp_pt' of procedure 'gravity_pointmasses'
pencil_consistency_check: checking requested pencils
pencil_consistency_check: performing small pencil check
At line 2578 of file hydro.f90
Fortran runtime warning: An array temporary was created for argument 'gradf' of procedure 'h_dot_grad_scl'
At line 3034 of file magnetic.f90
Fortran runtime warning: An array temporary was created for argument 'gradf' of procedure 'h_dot_grad_scl'
Program received signal SIGFPE: Floating-point exception - erroneous arithmetic operation.
Backtrace for this error:
#0 0x7F7BD5AED777
#1 0x7F7BD5AEDD7E
#2 0x7F7BD5007CAF
#3 0x7F7BD57FAF28
#4 0x7F7BD5801A41
#5 0x4BA7D0 in __dustdensity_MOD_calc_pencils_dustdensity at dustdensity.f90:1572 (discriminator 2)
#6 0x1329484 in rhs_cpu at equ.f90:809
#7 0x132B949 in __equ_MOD_pde at equ.f90:334
#8 0x1337FBA in __pencil_check_MOD_pencil_consistency_check at pencil_check.f90:206 (discriminator 2)
#9 0x1344B14 in run at run.f90:534
'env MODULE_PREFIX=__ MODULE_INFIX=_MOD_ MODULE_SUFFIX= ./src/run.x' failed:
Aborting. ['\nice -n 15 pc_run --config-files=GNU-GCC_MPI+GNU-GCC_debug run' reported: ]
not ok:
Floating-point exception.
testing/samples/backwards-compatible: (3/72)
Compiling.. ok 01:31
Starting.. ok 00:00
Running.. ok 00:00
Validating results.. ok
Time used: 01:31 = 01:31 + 00:00
testing/samples/1d-tests/implicit_diffusion: (4/72)
Compiling.. ok 01:05
Starting.. ok 00:00
Running.. ok 00:00
Validating results.. ok
Time used: 01:06 = 01:05 + 00:00
testing/samples/2d-tests/chemistry_GrayScott: (5/72)
Compiling.. ok 00:59
Starting.. ok 00:00
Running.. ok 00:05
Validating results.. ok
Time used: 01:05 = 00:59 + 00:06
testing/samples/2d-tests/boussinesq_convection: (6/72)
Compiling.. ok 01:09
Starting.. ok 00:00
Running.. ok 00:00
Validating results.. ok
Time used: 01:09 = 01:09 + 00:00
testing/samples/2d-tests/selfgravitating-shearwave: (7/72)
Compiling.. ok 01:17
Starting.. ok 00:01
Running.. ok 00:11
Validating results.. ok
Time used: 01:30 = 01:17 + 00:13
testing/samples/2d-tests/shearwave-dust-par: (8/72)
Compiling.. ok 01:22
Starting.. ok 00:01
Running.. ok 00:18
Validating results.. ok
Time used: 01:42 = 01:22 + 00:20
testing/samples/0d-tests/heating_ionize: (9/72)
Compiling.. [double] ok 01:02
Starting.. ok 00:00
Running.. ok 00:06
Validating results.. ok
Time used: 01:09 = 01:02 + 00:07
testing/samples/dust-vortex: (10/72)
Compiling.. ok 01:45
Starting.. ok 00:00
Running.. ok 00:49
Validating results.. ok
Time used: 02:34 = 01:45 + 00:49
testing/samples/damped_alfven_waves: (11/72)
Compiling.. ok 01:34
Starting.. ok 00:01
Running.. ok 02:02
Validating results.. ok
Time used: 03:38 = 01:34 + 02:04
testing/samples/2d-tests/streaming_instability: (12/72)
Compiling.. ok 01:23
Starting.. ok 00:01
Running.. ok 01:00
Validating results.. ok
Time used: 02:26 = 01:23 + 01:02
testing/samples/helical-MHDturb: (13/72)
Compiling.. ok 01:53
Starting.. ok 00:00
Running.. ok 01:52
Validating results.. ok
Time used: 03:46 = 01:53 + 01:53
testing/samples/0d-tests/heating_noionize: (14/72)
Compiling.. ok 01:03
Starting.. ok 00:00
Running.. ok 00:00
Validating results.. ok
Time used: 01:03 = 01:03 + 00:00
testing/samples/1d-tests/H2_flamespeed: (15/72)
Compiling.. ok 01:12
Starting.. ok 00:00
Running.. ok 00:05
Validating results.. ok
Time used: 01:17 = 01:12 + 00:05
testing/samples/chiral-diffusion: (16/72)
Compiling.. ok 00:54
Starting.. ok 00:00
Running.. ok 00:00
Validating results.. ok
Time used: 00:54 = 00:54 + 00:00
testing/samples/cosmicray: (17/72)
Compiling.. ok 01:03
Starting.. ok 00:00
Running.. ok 00:00
Validating results.. ok
Time used: 01:03 = 01:03 + 00:00
testing/samples/1d-tests/sod_10: (18/72)
Compiling.. ok 01:06
Starting.. ok 00:00
Running.. ok 00:01
Validating results.. ok
Time used: 01:07 = 01:06 + 00:01
testing/samples/1d-tests/ambipolar_diffusion: (19/72)
Compiling.. ok 01:10
Starting.. ok 00:00
Running.. ok 00:09
Validating results.. ok
Time used: 01:19 = 01:10 + 00:09
testing/samples/GravitationalWaves: (20/72)
Compiling.. ok 01:31
Starting.. ok 00:01
Running.. ok 00:04
Validating results.. not ok:
Files reference.out, data/time_series.dat differ:
uxpt: Row 2: 5.706e-10 > -8.045e-09 according to absolute accuracy 1.5e-12
uxp2: Row 2: 7.128e-10 > -7.868e-08 according to absolute accuracy 1.5e-12
Expected:
--it-----t--------dt-------uxpt-------uxp2--------EEM-------EEGW-------gg2m------hrms---
0 0.000 2.00E-02 0.000E+00 0.000E+00 4.9997E-01 0.0000E+00 0.00E+00 0.00E+00
1 0.020 2.00E-02 5.706E-10 7.128E-10 4.9997E-01 2.5117E-03 2.53E-01 5.03E-03
2 0.040 2.00E-02 1.123E-09 1.395E-09 4.9997E-01 1.0031E-02 1.01E+00 2.01E-02
3 0.060 2.00E-02 1.638E-09 2.017E-09 4.9997E-01 2.2509E-02 2.26E+00 4.52E-02
4 0.080 2.00E-02 2.099E-09 2.548E-09 4.9997E-01 3.9866E-02 4.01E+00 8.03E-02
5 0.100 2.00E-02 2.486E-09 2.958E-09 4.9997E-01 6.1992E-02 6.23E+00 1.25E-01
6 0.120 2.00E-02 2.781E-09 3.217E-09 4.9997E-01 8.8746E-02 8.92E+00 1.80E-01
7 0.140 2.00E-02 2.968E-09 3.296E-09 4.9997E-01 1.1995E-01 1.21E+01 2.45E-01
8 0.160 2.00E-02 3.027E-09 3.166E-09 4.9997E-01 1.5542E-01 1.56E+01 3.19E-01
9 0.180 2.00E-02 2.943E-09 2.798E-09 4.9997E-01 1.9491E-01 1.96E+01 4.03E-01
Got:
--it-----t--------dt-------uxpt-------uxp2--------EEM-------EEGW-------gg2m------hrms---
0 0.000 2.00E-02 0.000E+00 0.000E+00 4.9997E-01 0.0000E+00 0.00E+00 0.00E+00
1 0.020 2.00E-02 -8.045E-09 -7.868E-08 4.9997E-01 2.5117E-03 2.53E-01 5.03E-03
2 0.040 2.00E-02 -1.608E-08 -1.574E-07 4.9997E-01 1.0031E-02 1.01E+00 2.01E-02
3 0.060 2.00E-02 -2.409E-08 -2.360E-07 4.9997E-01 2.2509E-02 2.26E+00 4.52E-02
4 0.080 2.00E-02 -3.207E-08 -3.147E-07 4.9997E-01 3.9866E-02 4.01E+00 8.03E-02
5 0.100 2.00E-02 -4.001E-08 -3.934E-07 4.9997E-01 6.1992E-02 6.23E+00 1.25E-01
6 0.120 2.00E-02 -4.790E-08 -4.690E-07 4.9997E-01 8.8746E-02 8.92E+00 1.80E-01
7 0.140 2.00E-02 -5.573E-08 -5.419E-07 4.9997E-01 1.1995E-01 1.21E+01 2.45E-01
8 0.160 2.00E-02 -6.348E-08 -6.148E-07 4.9997E-01 1.5542E-01 1.56E+01 3.19E-01
9 0.180 2.00E-02 -7.116E-08 -6.798E-07 4.9997E-01 1.9491E-01 1.96E+01 4.03E-01
Time used: 01:37 = 01:31 + 00:05
testing/samples/polymer/forced_3dturbulence: (21/72)
Compiling.. ok 01:26
Starting.. ok 00:00
Running.. ok 00:17
Validating results.. ok
Time used: 01:43 = 01:26 + 00:17
testing/samples/testfield_z: (22/72)
Compiling.. ok 01:33
Starting.. ok 00:00
Running.. ok 00:29
Validating results.. ok
Time used: 02:02 = 01:33 + 00:29
testing/samples/random_uu_particles: (23/72)
Compiling.. ok 01:38
Starting.. ok 00:00
Running.. ok 02:05
Validating results.. ok
Time used: 03:45 = 01:38 + 02:06
testing/samples/1d-tests/solar-atmosphere-temperature: (24/72)
Compiling.. [double] ok 01:02
Starting.. ok 00:00
Running.. ok 00:18
Validating results.. ok
Time used: 01:21 = 01:02 + 00:18
testing/samples/kin-dynamo: (25/72)
Compiling.. ok 01:03
Starting.. ok 00:00
Running.. ok 00:16
Validating results.. ok
Time used: 01:20 = 01:03 + 00:16
testing/samples/meissner: (26/72)
Compiling.. [double] ok 01:35
Starting.. ok 00:00
Running.. ok 00:31
Validating results.. ok
Time used: 02:07 = 01:35 + 00:32
testing/samples/conv-slab-noequi: (27/72)
Compiling.. ok 01:27
Starting.. ok 00:00
Running.. ok 00:47
Validating results.. ok
Time used: 02:14 = 01:27 + 00:47
testing/samples/corona: (28/72)
Compiling.. ok 01:48
Starting.. ok 00:02
Running.. ok 02:36
Validating results.. ok
Time used: 04:28 = 01:48 + 02:39
testing/samples/2d-tests/globaldisc: (29/72)
Compiling.. ok 01:06
Starting.. ok 00:00
Running.. ok 00:46
Validating results.. ok
Time used: 01:53 = 01:06 + 00:46
testing/samples/2d-tests/cylindrical_gdisk: (30/72)
Compiling.. ok 01:05
Starting.. ok 00:00
Running.. ok 00:00
Validating results.. ok
Time used: 01:06 = 01:05 + 00:00
testing/samples/2d-tests/planet-disk-fargo: (31/72)
Compiling.. ok 01:19
Starting.. ok 00:01
Running.. ok 00:02
Validating results.. ok
Time used: 01:23 = 01:19 + 00:04
testing/samples/spherical-globaldisk: (32/72)
Compiling.. ok 01:31
Starting.. ok 00:01
Running.. ok 00:02
Validating results.. ok
Time used: 01:35 = 01:31 + 00:03
testing/samples/spherical-globaldisk-mhd: (33/72)
Compiling.. ok 01:37
Starting.. ok 00:01
Running.. ok 00:05
Validating results.. ok
Time used: 01:45 = 01:37 + 00:07
testing/samples/spherical-gdisk-planet-thermo: (34/72)
Compiling.. ok 01:34
Starting.. ok 00:01
Running.. ok 00:47
Validating results.. ok
Time used: 02:23 = 01:34 + 00:49
testing/samples/0d-tests/solar_system: (35/72)
Compiling.. ok 01:18
Starting.. ok 00:01
Running.. ok 00:01
Validating results.. not ok:
Files reference.out, data/time_series.dat differ:
xq2: Row 6: 0.38623828 > 0.386238278 according to absolute accuracy 1.5e-09
xq3: Row 9: 0.717676916 > 0.717676914 according to absolute accuracy 1.5e-09
yq1: Row 2: -3.136248186 > -3.136248214 according to absolute accuracy 1.5e-09
yq2: Row 6: 2.154214548 < 2.154214552 according to absolute accuracy 1.5e-09
yq3: Row 6: 0.828598265 > 0.828598263 according to absolute accuracy 1.5e-09
yq4: Row 10: 0.907598177 > 0.907598175 according to absolute accuracy 1.5e-09
yq5: Row 10: 0.492841006 > 0.492841004 according to absolute accuracy 1.5e-09
vxq2: Row 3: 0.035217185 > 0.035217182 according to absolute accuracy 1.5e-09
vxq3: Row 5: 0.0109311 > 0.010931098 according to absolute accuracy 1.5e-09
vxq4: Row 5: 0.00423996 > 0.004239958 according to absolute accuracy 1.5e-09
vxq5: Row 10: 0.002767945 > 0.002767943 according to absolute accuracy 1.5e-09
vyq2: Row 3: 1.620671135 < 1.620671137 according to absolute accuracy 1.5e-09
vyq3: Row 6: 1.177504883 < 1.177504885 according to absolute accuracy 1.5e-09
vyq4: Row 9: 0.999136788 < 0.99913679 according to absolute accuracy 1.5e-09
Expected:
----it--------t---------dt----------xq1------------xq2------------xq3------------xq4------------xq5------------xq6------------xq7------------xq8------------xq9------------yq1------------yq2------------yq3------------yq4------------yq5------------yq6------------yq7------------yq8------------yq9-----------vxq1-----------vxq2-----------vxq3-----------vxq4-----------vxq5-----------vxq6-----------vxq7-----------vxq8-----------vxq9-----------vyq1-----------vyq2-----------vyq3-----------vyq4-----------vyq5-----------vyq6-----------vyq7-----------vyq8-----------vyq9------
0 0.000 1.00E-02 0.010465686 0.369534314 0.709534314 0.989534314 1.489534314 5.189534314 9.989534314 18.989534314 29.989534314 -3.141587346 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000558808 1.621655404 1.177952494 0.999441192 0.815937773 0.437970202 0.315668958 0.228856926 0.182015378
10 0.100 1.00E-02 0.010465583 0.370523496 0.709680914 0.989588610 1.489550267 5.189534538 9.989534045 18.989534231 29.989534276 -3.136248186 0.438418581 0.166005314 0.100999151 0.054777821 0.008439489 0.003159997 0.001205174 0.000606930 -0.000002055 0.019451598 0.002924988 0.001085014 0.000318988 0.000004481 -0.000005377 -0.000001665 -0.000000757 0.000558719 1.621378953 1.177932667 0.999436254 0.815936515 0.437970188 0.315668978 0.228856928 0.182015379
20 0.200 1.00E-02 0.010465276 0.373301818 0.710116736 0.989750992 1.489598085 5.189535210 9.989533239 18.989533981 29.989534163 -3.130910599 0.874444002 0.331936852 0.201986240 0.109554300 0.016878977 0.006319994 0.002410348 0.001213859 -0.000004071 0.035217185 0.005771513 0.002160045 0.000637137 0.000008961 -0.000010753 -0.000003330 -0.000001514 0.000558458 1.620671135 1.177874341 0.999421431 0.815932741 0.437970145 0.315669037 0.228856933 0.182015380
30 0.300 1.00E-02 0.010464771 0.377349155 0.710830112 0.990019960 1.489677639 5.189536330 9.989531895 18.989533565 29.989533973 -3.125576044 1.306226028 0.497723139 0.302949311 0.164328099 0.025318463 0.009479993 0.003615522 0.001820789 -0.000006014 0.044466349 0.008463787 0.003215038 0.000953592 0.000013440 -0.000016127 -0.000004995 -0.000002270 0.000558045 1.619802382 1.177780446 0.999396706 0.815926445 0.437970073 0.315669135 0.228856942 0.182015381
40 0.400 1.00E-02 0.010464077 0.381929277 0.711802030 0.990393006 1.489788719 5.189537898 9.989530013 18.989532982 29.989533709 -3.120245769 1.732807800 0.663297154 0.403876634 0.219097886 0.033757944 0.012639993 0.004820696 0.002427719 -0.000007856 0.045761552 0.010931100 0.004239960 0.001267486 0.000017916 -0.000021498 -0.000006660 -0.000003027 0.000557504 1.619043434 1.177655441 0.999362214 0.815917629 0.437969973 0.315669273 0.228856955 0.182015384
50 0.500 1.00E-02 0.010463204 0.386238280 0.713006745 0.990866630 1.489931023 5.189539913 9.989527595 18.989532233 29.989533368 -3.114920744 2.154214548 0.828598265 0.504756833 0.273862338 0.042197421 0.015799995 0.006025871 0.003034648 -0.000009584 0.039173746 0.013109821 0.005224983 0.001577940 0.000022390 -0.000026866 -0.000008325 -0.000003784 0.000556868 1.618542913 1.177504883 0.999318315 0.815906310 0.437969845 0.315669449 0.228856971 0.182015387
60 0.600 1.00E-02 0.010462164 0.389546817 0.714412576 0.991436366 1.490104164 5.189542376 9.989524640 18.989531317 29.989532952 -3.109601636 2.571329473 0.993573886 0.605579013 0.328620149 0.050636891 0.018960001 0.007231045 0.003641578 -0.000011190 0.026069480 0.014945048 0.006160688 0.001884074 0.000026860 -0.000032230 -0.000009990 -0.000004541 0.000556169 1.618304141 1.177335048 0.999265587 0.815892530 0.437969687 0.315669665 0.228856990 0.182015390
70 0.700 1.00E-02 0.010460970 0.391311862 0.715982840 0.992096835 1.490307666 5.189545285 9.989521149 18.989530235 29.989532460 -3.104288821 2.985659885 1.158180810 0.706332883 0.383370033 0.059076353 0.022120009 0.008436220 0.004248508 -0.000012681 0.008742361 0.016391920 0.007038203 0.002185018 0.000031326 -0.000037589 -0.000011654 -0.000005298 0.000555436 1.618247683 1.177152577 0.999204783 0.815876353 0.437969501 0.315669920 0.228857013 0.182015395
80 0.800 1.00E-02 0.010459631 0.391249628 0.717676916 0.992841801 1.490540967 5.189548641 9.989517123 18.989528986 29.989531892 -3.098982431 -2.884108686 1.322386186 0.807008862 0.438110729 0.067515807 0.025280022 0.009641394 0.004855438 -0.000014069 -0.009980220 0.017416587 0.007849315 0.002479917 0.000035787 -0.000042942 -0.000013318 -0.000006054 0.000554693 1.618300897 1.176964141 0.999136788 0.815857866 0.437969286 0.315670214 0.228857040 0.182015400
90 0.900 1.00E-02 0.010458159 0.389370300 0.719451372 0.993664243 1.490803421 5.189552442 9.989512561 18.989527571 29.989531249 -3.093682426 -2.469622932 1.486168141 0.907598177 0.492841006 0.075955250 0.028440039 0.010846569 0.005462367 -0.000015369 -0.027105611 0.017996790 0.008586548 0.002767945 0.000040242 -0.000048288 -0.000014982 -0.000006811 0.000553953 1.618457699 1.176776130 0.999062584 0.815837172 0.437969043 0.315670546 0.228857070 0.182015406
Got:
----it--------t---------dt----------xq1------------xq2------------xq3------------xq4------------xq5------------xq6------------xq7------------xq8------------xq9------------yq1------------yq2------------yq3------------yq4------------yq5------------yq6------------yq7------------yq8------------yq9-----------vxq1-----------vxq2-----------vxq3-----------vxq4-----------vxq5-----------vxq6-----------vxq7-----------vxq8-----------vxq9-----------vyq1-----------vyq2-----------vyq3-----------vyq4-----------vyq5-----------vyq6-----------vyq7-----------vyq8-----------vyq9------
0 0.000 1.00E-02 0.010465686 0.369534314 0.709534314 0.989534314 1.489534314 5.189534314 9.989534314 18.989534314 29.989534314 -3.141587346 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000000000 0.000558808 1.621655404 1.177952494 0.999441192 0.815937773 0.437970202 0.315668958 0.228856926 0.182015378
10 0.100 1.00E-02 0.010465583 0.370523496 0.709680914 0.989588610 1.489550267 5.189534538 9.989534045 18.989534231 29.989534276 -3.136248214 0.438418581 0.166005314 0.100999151 0.054777821 0.008439489 0.003159997 0.001205174 0.000606930 -0.000002055 0.019451597 0.002924987 0.001085014 0.000318988 0.000004481 -0.000005377 -0.000001665 -0.000000757 0.000558719 1.621378953 1.177932667 0.999436254 0.815936515 0.437970188 0.315668978 0.228856928 0.182015379
20 0.200 1.00E-02 0.010465276 0.373301817 0.710116736 0.989750992 1.489598085 5.189535210 9.989533239 18.989533981 29.989534163 -3.130910655 0.874444001 0.331936851 0.201986239 0.109554300 0.016878977 0.006319994 0.002410348 0.001213859 -0.000004071 0.035217182 0.005771512 0.002160044 0.000637136 0.000008961 -0.000010753 -0.000003330 -0.000001514 0.000558458 1.620671137 1.177874341 0.999421432 0.815932741 0.437970145 0.315669037 0.228856933 0.182015380
30 0.300 1.00E-02 0.010464771 0.377349155 0.710830112 0.990019960 1.489677639 5.189536330 9.989531895 18.989533565 29.989533973 -3.125576129 1.306226027 0.497723138 0.302949310 0.164328099 0.025318462 0.009479993 0.003615522 0.001820789 -0.000006014 0.044466345 0.008463786 0.003215037 0.000953591 0.000013439 -0.000016127 -0.000004995 -0.000002270 0.000558045 1.619802386 1.177780447 0.999396706 0.815926445 0.437970073 0.315669135 0.228856942 0.182015381
40 0.400 1.00E-02 0.010464077 0.381929276 0.711802029 0.990393006 1.489788719 5.189537898 9.989530013 18.989532982 29.989533709 -3.120245882 1.732807801 0.663297153 0.403876633 0.219097885 0.033757944 0.012639993 0.004820696 0.002427719 -0.000007857 0.045761546 0.010931098 0.004239958 0.001267485 0.000017916 -0.000021498 -0.000006660 -0.000003027 0.000557504 1.619043440 1.177655442 0.999362214 0.815917629 0.437969973 0.315669273 0.228856955 0.182015384
50 0.500 1.00E-02 0.010463204 0.386238278 0.713006745 0.990866629 1.489931023 5.189539913 9.989527595 18.989532233 29.989533368 -3.114920885 2.154214552 0.828598263 0.504756832 0.273862337 0.042197420 0.015799995 0.006025870 0.003034648 -0.000009584 0.039173738 0.013109819 0.005224982 0.001577939 0.000022390 -0.000026866 -0.000008325 -0.000003784 0.000556868 1.618542922 1.177504885 0.999318316 0.815906310 0.437969845 0.315669449 0.228856971 0.182015387
60 0.600 1.00E-02 0.010462164 0.389546815 0.714412575 0.991436366 1.490104164 5.189542376 9.989524640 18.989531317 29.989532952 -3.109601806 2.571329482 0.993573885 0.605579012 0.328620148 0.050636890 0.018960001 0.007231045 0.003641578 -0.000011190 0.026069470 0.014945045 0.006160686 0.001884073 0.000026860 -0.000032230 -0.000009990 -0.000004541 0.000556169 1.618304152 1.177335051 0.999265588 0.815892530 0.437969687 0.315669665 0.228856990 0.182015390
70 0.700 1.00E-02 0.010460970 0.391311858 0.715982839 0.992096834 1.490307665 5.189545285 9.989521149 18.989530235 29.989532460 -3.104289019 2.985659899 1.158180809 0.706332882 0.383370032 0.059076353 0.022120009 0.008436219 0.004248508 -0.000012681 0.008742350 0.016391916 0.007038201 0.002185017 0.000031326 -0.000037589 -0.000011654 -0.000005298 0.000555436 1.618247695 1.177152581 0.999204784 0.815876354 0.437969501 0.315669920 0.228857013 0.182015395
80 0.800 1.00E-02 0.010459631 0.391249623 0.717676914 0.992841800 1.490540967 5.189548641 9.989517123 18.989528986 29.989531892 -3.098982657 -2.884108665 1.322386185 0.807008861 0.438110728 0.067515806 0.025280022 0.009641394 0.004855438 -0.000014069 -0.009980230 0.017416582 0.007849313 0.002479916 0.000035787 -0.000042942 -0.000013318 -0.000006054 0.000554693 1.618300909 1.176964146 0.999136790 0.815857866 0.437969286 0.315670214 0.228857040 0.182015400
90 0.900 1.00E-02 0.010458159 0.389370295 0.719451369 0.993664242 1.490803421 5.189552442 9.989512561 18.989527571 29.989531249 -3.093682680 -2.469622904 1.486168141 0.907598175 0.492841004 0.075955249 0.028440039 0.010846569 0.005462367 -0.000015369 -0.027105618 0.017996784 0.008586545 0.002767943 0.000040242 -0.000048289 -0.000014982 -0.000006811 0.000553953 1.618457709 1.176776136 0.999062586 0.815837173 0.437969043 0.315670546 0.228857070 0.182015406
Time used: 01:21 = 01:18 + 00:02
testing/samples/mdwarf: (36/72)
Compiling.. ok 01:32
Starting.. ok 00:00
Running.. ok 01:22
Validating results.. ok
Time used: 02:55 = 01:32 + 01:22
testing/samples/sedimentation: (37/72)
Compiling.. ok 01:54
Starting.. ok 00:01
Running.. ok 02:18
Validating results.. ok
Time used: 04:14 = 01:54 + 02:20
testing/samples/MRI-turbulence_hyper: (38/72)
Compiling.. [double] ok 01:42
Starting.. ok 00:01
Running.. ok 01:00
Validating results.. ok
Time used: 02:44 = 01:42 + 01:02
testing/samples/dust_turb_globaldisk: (39/72)
Compiling.. ok 01:49
Starting.. ok 00:01
Running.. ok 03:46
Validating results.. ok
Time used: 05:38 = 01:49 + 03:48
testing/samples/geodynamo: (40/72)
Compiling.. ok 01:38
Starting.. ok 00:01
Running.. ok 04:49
Validating results.. ok
Time used: 06:29 = 01:38 + 04:50
testing/samples/2d-tests/cylinder_deposition: (41/72)
Compiling.. ok 01:25
Starting.. ok 00:00
Running.. ok 00:11
Validating results.. ok
Time used: 01:36 = 01:25 + 00:11
testing/samples/2d-tests/selfgravdisk-deadzone-dust: (42/72)
Compiling.. ok 01:31
Starting.. ok 00:01
Running.. ok 00:27
Validating results.. ok
Time used: 02:00 = 01:31 + 00:29
testing/samples/2d-tests/spherical_viscous_ring: (43/72)
Compiling.. ok 01:04
Starting.. ok 00:00
Running.. ok 00:03
Validating results.. ok
Time used: 01:08 = 01:04 + 00:03
testing/samples/2d-tests/field-loop-fargo: (44/72)
Compiling.. ok 01:23
Starting.. ok 00:01
Running.. ok 00:10
Validating results.. ok
Time used: 01:34 = 01:23 + 00:11
testing/samples/baroclinic: (45/72)
Compiling.. ok 01:40
Starting.. ok 00:01
Running.. ok 01:24
Validating results.. ok
Time used: 03:06 = 01:40 + 01:25
testing/samples/1d-tests/sedimentation-noneq-blocks: (46/72)
Compiling.. ok 01:23
Starting.. ok 00:01
Running.. ok 00:06
Validating results.. ok
Time used: 01:31 = 01:23 + 00:07
testing/samples/1d-tests/alphadisk: (47/72)
Compiling.. ok 00:57
Starting.. ok 00:03
Running.. ok 00:12
Validating results.. ok
Time used: 01:14 = 00:57 + 00:16
testing/samples/implicit_resistivity: (48/72)
Compiling.. ok 01:24
Starting.. ok 00:00
Running.. ok 00:20
Validating results.. ok
Time used: 01:44 = 01:24 + 00:20
testing/samples/debris-photoelectric-fluid: (49/72)
Compiling.. ok 01:28
Starting.. ok 00:00
Running.. ok 00:09
Validating results.. ok
Time used: 01:38 = 01:28 + 00:09
testing/samples/2d-tests/debris-photoeletric-streaming: (50/72)
Compiling.. ok 01:22
Starting.. ok 00:01
Running.. ok 00:10
Validating results.. ok
Time used: 01:34 = 01:22 + 00:11
testing/samples/2d-tests/Kelvin-Helmholtz: (51/72)
Compiling.. ok 01:14
Starting.. ok 00:01
Running.. ok 00:01
Validating results.. ok
Time used: 01:17 = 01:14 + 00:03
testing/samples/2d-tests/selfgravdisk-planet-dust: (52/72)
Compiling.. ok 01:31
Starting.. ok 00:01
Running.. ok 00:27
Validating results.. ok
Time used: 02:00 = 01:31 + 00:28
testing/samples/cylindrical-globaldisk-dzone: (53/72)
Compiling.. ok 02:29
Starting.. ok 00:01
Running.. ok 00:10
Validating results.. ok
Time used: 02:41 = 02:29 + 00:12
testing/samples/2d-tests/turbulent_potential: (54/72)
Compiling.. ok 01:16
Starting.. ok 00:01
Running.. ok 00:10
Validating results.. ok
Time used: 01:28 = 01:16 + 00:11
testing/samples/0d-tests/coagulation-fragmentation: (55/72)
Compiling.. ok 01:07
Starting.. ok 00:00
Running.. not ok: 00:00
hostname = lorraine
Non-MPI run
1 CPU
lparticles = 1
lpointmasses = 0
Subcommand: run
Revision: Last Changed Rev: 75984
Tue Aug 14 02:04:38 2018
Running 'env MODULE_PREFIX=__ MODULE_INFIX=_MOD_ MODULE_SUFFIX= ./src/run.x'...
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
The verbose level is ip= 14 (ldebug= F )
This is a 0-D run
nxgrid, nygrid, nzgrid= 1 1 1
Lx, Ly, Lz= 6.2831853071795862 6.2831853071795862 6.2831853071795862
Vbox= 1.0000000000000000
WARNING: uxmy, uymy, uzmy, ux2my, uy2my, uz2my, uxuymy, uxuzmy, uyuzmy diagnostic(s) in xzaver.in not defined!
WARNING: uxmz, uymz, uzmz, ux2mz, uy2mz, uz2mz, uxuymz, uxuzmz, uyuzmz diagnostic(s) in xyaver.in not defined!
setup_slices: slice_position = p
setup_slices: ix_loc,iy_loc,iz_loc,iz2_loc, (video files) = 4 4 4 4
units_general: unit_velocity= 1.0000000000000000
units_general: unit_density= 1.0000000000000000
units_general: unit_length= 1.0000000000000000
units_general: unit_magnetic= 3.5449077018110318
units_eos: unit_temperature= 1.2027220936797545E-008
units_eos: cp, lnTT0, cs0, pp0= 1.0000000000000000 0.0000000000000000E+000 1.0000000000000000 1.0000000000000000
initialize_density: no hydro, turned off continuity equation
initialize_density: 0-D run, turned off continuity equation
diffusion: nothing (i.e. no mass diffusion)
select_eos_variable: Using rho and cs2
initialize_particles: Global pressure gradient with beta_dPdr_dust= -0.10000000000000001
initialize_particles: dust-to-gas ratio eps_dtog= 1.0000000000000000
initialize_particles: mass per constituent particle mpmat= 4.1887902047863905
initialize_particles: mass per superparticle mp_swarm = 1.0000000000000000E-002
initialize_particles: number density per superparticle np_swarm= 0.0000000000000000E+000
initialize_particles: mass density per superparticle rhop_swarm= 1.0000000000000000E-002
initialize particles: set minimum collisional time-scale equal to two times the Courant time-step.
initialize_particles_map: selected cloud-in-cell for particle-mesh method.
initialize_particles_radius: mass per dust grain mpmat= 4.1887902047863905
pencil_consistency_check: checking pencil case
dnpswarm_dt_pencil: Calculate dnpswarm_dt
dxxp_dt: Calculate dxxp_dt
dxxp_dt: Particles boundary condition bcpx=p
dxxp_dt: Particles boundary condition bcpy=p
dxxp_dt: Particles boundary condition bcpz=p
dxxp_dt: Set rate of change of particle position equal to particle velocity.
dvvp_dt: Calculate dvvp_dt
dvvp_dt: Calculating gravity
dvvp_dt: No gravity in x-direction.
dvvp_dt: No gravity in z-direction.
dvvp_dt: No radial gravity
pencil_consistency_check: checking requested pencils
pencil_consistency_check: performing small pencil check
pencil_consistency_check: the small pencil check reported no problems
pencil_consistency_check: performing full pencil check (takes a while)
pencil_consistency_check: possible overcalculation... pencil rho ( 4) is requested, but does not appear to be required!
pencil_consistency_check: possible overcalculation... pencil cs2 ( 41) is requested, but does not appear to be required!
pencil_consistency_check: checking dependence on pencil initialization
pencil_consistency_check: results are independent of pencil initialization
pencil_consistency_check: checking diagnostics pencils
pencil_consistency_check: performing small pencil check
pencil_consistency_check: the small pencil check has found one or more
MISSING diagnostics pencils. This could be a serious problem.
pencil_consistency_check: the full pencil check beginning now will find
out which pencils are missing
pencil_consistency_check: performing full pencil check (takes a while)
pencil_consistency_check: MISSING PENCIL... pencil Ywater ( 1) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil lambda ( 2) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil lnrho ( 3) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil glnrho ( 6) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil grho ( 7) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uglnrho ( 8) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ugrho ( 9) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil glnrho2 ( 10) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2lnrho ( 11) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2rho ( 12) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del6lnrho ( 13) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del6rho ( 14) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil hlnrho ( 15) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil sglnrho ( 16) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uij5glnrho ( 17) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil transprho ( 18) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ekin ( 19) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uuadvec_glnrho ( 20) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uuadvec_grho ( 21) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rhos1 ( 22) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil glnrhos ( 23) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rhod ( 24) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil udropav ( 25) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rhodsum ( 26) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil glnrhodsum ( 27) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uud ( 28) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil divud ( 29) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil sdij ( 30) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil Ma2 ( 31) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil fpres ( 32) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil tcond ( 33) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil sglnTT ( 34) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uglnTT ( 35) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ss ( 36) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil gss ( 37) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ee ( 38) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil pp ( 39) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil lnTT ( 40) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil cp ( 42) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil cp1 ( 43) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil cp1tilde ( 44) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil glnTT ( 45) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil TT ( 46) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil TT1 ( 47) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil gTT ( 48) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil yH ( 49) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil hss ( 50) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil hlnTT ( 51) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2ss ( 52) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del6ss ( 53) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2lnTT ( 54) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil cv ( 55) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil cv1 ( 56) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del6lnTT ( 57) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil gamma ( 58) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2TT ( 59) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del6TT ( 60) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil glnmumol ( 61) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ppvap ( 62) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil csvap2 ( 63) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil TTb ( 64) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rho_anel ( 65) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil eth ( 66) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil geth ( 67) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2eth ( 68) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil heth ( 69) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil eths ( 70) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil geths ( 71) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rho1gpp ( 72) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil fcont ( 73) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil gg ( 74) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil x_mn ( 75) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil y_mn ( 76) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil z_mn ( 77) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil r_mn ( 78) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil r_mn1 ( 79) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil phix ( 80) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil phiy ( 81) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil pomx ( 82) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil pomy ( 83) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rcyl_mn ( 84) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rcyl_mn1 ( 85) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil phi_mn ( 86) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil evr ( 87) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rr ( 88) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil evth ( 89) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil u2 ( 91) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil oo ( 92) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ou ( 93) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uij ( 94) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil sij ( 95) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil sij2 ( 96) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil divu ( 97) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uij5 ( 98) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil graddivu ( 99) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ugu ( 100) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ogu ( 101) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2u ( 102) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil curlo ( 103) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uu_advec ( 104) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil bb ( 105) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil bij ( 106) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil jxbr ( 107) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ss12 ( 108) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil b2 ( 109) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uxb ( 110) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil jj ( 111) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil aa ( 112) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil diva ( 113) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2a ( 114) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil aij ( 115) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil bunit ( 116) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil mf_EMF ( 117) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil mf_EMFdotB ( 118) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uun ( 119) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil divun ( 120) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil snij ( 121) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rhop ( 123) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil vol ( 124) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil peh ( 125) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uup ( 126) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil np_rad ( 127) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil npvz ( 128) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil npvz2 ( 129) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil npuz ( 130) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil sherwood ( 131) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil epsp ( 132) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil grhop ( 133) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil tauascalar ( 134) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil condensationRate ( 135) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil waterMixingRatio ( 136) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil lncc ( 139) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil glncc ( 140) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uglncc ( 141) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2lncc ( 142) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil hlncc ( 143) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil shock ( 144) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil gshock ( 145) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil shock_perp ( 146) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil gshock_perp ( 147) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil acc ( 148) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil gacc ( 149) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ugacc ( 150) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2acc ( 151) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ssat ( 152) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil fvisc ( 153) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil diffus_total ( 154) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil diffus_total2 ( 155) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil diffus_total3 ( 156) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil visc_heat ( 157) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil nu ( 158) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil gradnu ( 159) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil nu_smag ( 160) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: set lpencil_check_diagnos_opti=T in run.in to report
pencil_consistency_check: optimisation possibilities for diagnostics pencils
pencil_consistency_check: checking dependence on pencil initialization
STOPPED: pencil_consistency_check: one or more tests failed
pencil_consistency_check: diagnostics depend on pencil initialization
This is a serious problem that may show the use of
uninitialized pencils. Check carefully that all
pencils are calculated and that conjugate pencils are
calculated *after* the individual components
STOP 1
'env MODULE_PREFIX=__ MODULE_INFIX=_MOD_ MODULE_SUFFIX= ./src/run.x' failed:
Aborting. ['\nice -n 15 pc_run --config-files=GNU-GCC_MPI+GNU-GCC_debug run' reported: ]
not ok:
Pencil consistency check failed.
testing/samples/0d-tests/heating_ionize_planck: (56/72)
Compiling.. [double] ok 01:05
Starting.. ok 00:00
Running.. ok 00:00
Validating results.. ok
Time used: 01:05 = 01:05 + 00:00
testing/samples/1d-tests/jeans-drag-dustpar-x: (57/72)
Compiling.. ok 01:12
Starting.. ok 00:00
Running.. ok 00:00
Validating results.. ok
Time used: 01:13 = 01:12 + 00:00
testing/samples/1d-tests/jeans-x: (58/72)
Compiling.. ok 01:08
Starting.. ok 00:00
Running.. ok 00:00
Validating results.. ok
Time used: 01:08 = 01:08 + 00:00
testing/samples/1d-tests/sod_10s: (59/72)
Compiling.. ok 01:07
Starting.. ok 00:00
Running.. ok 00:01
Validating results.. ok
Time used: 01:08 = 01:07 + 00:01
testing/samples/1d-tests/toomre-x: (60/72)
Compiling.. ok 01:09
Starting.. ok 00:00
Running.. ok 00:00
Validating results.. ok
Time used: 01:09 = 01:09 + 00:00
testing/samples/2d-tests/bubble: (61/72)
Compiling.. ok 01:08
Starting.. ok 00:00
Running.. ok 00:01
Validating results.. ok
Time used: 01:10 = 01:08 + 00:01
testing/samples/2d-tests/conv-slab-MLT: (62/72)
Compiling.. ok 01:08
Starting.. ok 00:00
Running.. ok 00:01
Validating results.. ok
Time used: 01:09 = 01:08 + 00:01
testing/samples/2d-tests/2d_methane_flame: (63/72)
Compiling.. ok 01:18
Starting.. ok 00:04
Running.. not ok: 00:27
hostname = lorraine
MPI run
4 CPUs
4 nodes, 1 CPU per node
lparticles = 0
lpointmasses = 0
Subcommand: run
Revision: Last Changed Rev: 75984
Tue Aug 14 02:14:08 2018
Running under MPI
Running 'env MODULE_PREFIX=__ MODULE_INFIX=_MOD_ MODULE_SUFFIX= mpiexec -n 4 ./src/run.x'...
SVN: ------- v. ( ) $Id$
SVN: start.in,v v. 1.1 (2010-05-19 14:36:03) nilshau
Read inlet data from file!
Read inlet data from file!
Read inlet data from file!
Read inlet data from file!
SVN: run.in,v v. 1.1 (2010-05-19 14:36:03) nilshau
initialize_mpicomm: enabled MPI
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
Write pc_constants.pro in chemistry.f90
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
SVN: ------- v. ( ) $Id$
The verbose level is ip= 14 (ldebug= F )
This is a 2-D run
nxgrid, nygrid, nzgrid= 512 16 1
Lx, Ly, Lz= 0.50000000000000000 0.50000000000000000 0.10000000000000001
Vbox= 0.25000000000000000
WARNING: Y6m diagnostic(s) in print.in not defined!
setup_slices: slice_position = p
setup_slices: ix_loc,iy_loc,iz_loc,iz2_loc, (video files) = 4 4 4 4
units_general: unit_velocity= 1.0000000000000000
units_general: unit_density= 1.0000000000000000
units_general: unit_length= 1.0000000000000000
units_general: unit_magnetic= 3.5449077018110318
units_eos: chem.imp is found! Now cp, cv, gamma, mu are pencils ONLY!
diffusion: nothing (i.e. no mass diffusion)
select_eos_variable: Using lnrho and lnTT
heat conduction: nothing
heat conduction: nothing
heat conduction: nothing
tran.in/dat file with transport data is found.
the following species are found in tran.in/dat: beginning of the list:
CH2O ind_glob= 20 ind_chem= 15
CH3 ind_glob= 18 ind_chem= 13
CH3O ind_glob= 21 ind_chem= 16
CH4 ind_glob= 14 ind_chem= 9
CO ind_glob= 15 ind_chem= 10
CO2 ind_glob= 16 ind_chem= 11
H ind_glob= 8 ind_chem= 3
H2 ind_glob= 7 ind_chem= 2
H2O ind_glob= 12 ind_chem= 7
H2O2 ind_glob= 17 ind_chem= 12
HCO ind_glob= 19 ind_chem= 14
HO2 ind_glob= 13 ind_chem= 8
N2 ind_glob= 6 ind_chem= 1
O ind_glob= 9 ind_chem= 4
O2 ind_glob= 10 ind_chem= 5
OH ind_glob= 11 ind_chem= 6
the following species are found in tran.dat: end of the list:
lewis.dat file with transport data is found.
Species diffusion coefficients calculated using constant Lewis numbers.
lewis.dat: beginning of the list:
N2 ind_glob= 6 Lewis= 1.0000000000000000
H2 ind_glob= 7 Lewis= 0.29999999999999999
H ind_glob= 8 Lewis= 0.17999999999999999
O ind_glob= 9 Lewis= 0.69999999999999996
O2 ind_glob= 10 Lewis= 1.1100000000000001
OH ind_glob= 11 Lewis= 0.72999999999999998
H2O ind_glob= 12 Lewis= 0.82999999999999996
HO2 ind_glob= 13 Lewis= 1.1000000000000001
CH4 ind_glob= 14 Lewis= 0.96999999999999997
CO ind_glob= 15 Lewis= 1.1000000000000001
CO2 ind_glob= 16 Lewis= 1.3899999999999999
H2O2 ind_glob= 17 Lewis= 1.1200000000000001
CH3 ind_glob= 18 Lewis= 1.0000000000000000
HCO ind_glob= 19 Lewis= 1.2700000000000000
CH2O ind_glob= 20 Lewis= 1.2800000000000000
CH3O ind_glob= 21 Lewis= 1.3000000000000000
lewis.dat: end of the list:
Number of reactions= 35
Number of species= 16
Reinitializing chemistry.
Reading initial conditions in file CH4_p01_0phi0_7000tu0300
initchem: nothing
viscous force: nu is calculated for a mixture
pencil_consistency_check: checking pencil case
calc_for_chem_mixture: writing mix_quant.out file
get_reaction_rate: writing react.out file
pencil_consistency_check: checking requested pencils
pencil_consistency_check: performing small pencil check
At line 2578 of file hydro.f90
Fortran runtime warning: At line 2578 of file hydro.f90
Fortran runtime warning: An array temporary was created for argument 'gradf' of procedure 'h_dot_grad_scl'
At line 2578 of file hydro.f90
Fortran runtime warning: An array temporary was created for argument 'gradf' of procedure 'h_dot_grad_scl'
At line 2578 of file hydro.f90
Fortran runtime warning: An array temporary was created for argument 'gradf' of procedure 'h_dot_grad_scl'
An array temporary was created for argument 'gradf' of procedure 'h_dot_grad_scl'
pencil_consistency_check: the small pencil check reported no problems
pencil_consistency_check: performing full pencil check (takes a while)
pencil_consistency_check: possible overcalculation... pencil cp1 ( 4) is requested, but does not appear to be required!
pencil_consistency_check: possible overcalculation... pencil gXXk ( 6) is requested, but does not appear to be required!
pencil_consistency_check: possible overcalculation... pencil gYYk ( 9) is requested, but does not appear to be required!
pencil_consistency_check: possible overcalculation... pencil lambda1 ( 14) is requested, but does not appear to be required!
pencil_consistency_check: possible overcalculation... pencil S0_R ( 19) is requested, but does not appear to be required!
pencil_consistency_check: possible overcalculation... pencil cs2 ( 20) is requested, but does not appear to be required!
pencil_consistency_check: possible overcalculation... pencil glnpp ( 21) is requested, but does not appear to be required!
pencil_consistency_check: possible overcalculation... pencil del2pp ( 22) is requested, but does not appear to be required!
pencil_consistency_check: possible overcalculation... pencil glnrho2 ( 34) is requested, but does not appear to be required!
pencil_consistency_check: possible overcalculation... pencil del2lnrho ( 35) is requested, but does not appear to be required!
Program received signal SIGFPE: Floating-point exception - erroneous arithmetic operation.
Backtrace for this error:
Program received signal SIGFPE: Floating-point exception - erroneous arithmetic operation.
Backtrace for this error:
Program received signal SIGFPE: Floating-point exception - erroneous arithmetic operation.
Backtrace for this error:
Program received signal SIGFPE: Floating-point exception - erroneous arithmetic operation.
Backtrace for this error:
#0 0x7F7CA971E777
#1 0x7F7CA971ED7E
#2 0x7F7CA8C38CAF
#0 0x7F8C3B387777
#3 0x7F7CA945E870
#4 0x7F7CA9424F62
#0 0x7F9C67D6F777
#0 0x7F06437FC777
#1 0x7F9C67D6FD7E
#2 0x7F9C67289CAF
#3 0x7F9C67AAF870
#4 0x7F9C67A75F62
#1 0x7F06437FCD7E
#2 0x7F0642D16CAF
#3 0x7F064353C870
#4 0x7F0643502F62
#1 0x7F8C3B387D7E
#2 0x7F8C3A8A1CAF
#3 0x7F8C3B0C7870
#4 0x7F8C3B08DF62
#5 0x44F6C7 in get_reaction_rate at chemistry.f90:4177 (discriminator 3)
#5 0x44F6C7 in get_reaction_rate at chemistry.f90:4177 (discriminator 3)
#6 0x4457ED in calc_reaction_term at chemistry.f90:4380
#7 0x4ABD9C in __chemistry_MOD_calc_pencils_chemistry at chemistry.f90:937
#5 0x44F6C7 in get_reaction_rate at chemistry.f90:4177 (discriminator 3)
#6 0x4457ED in calc_reaction_term at chemistry.f90:4380
#7 0x4ABD9C in __chemistry_MOD_calc_pencils_chemistry at chemistry.f90:937
#6 0x4457ED in calc_reaction_term at chemistry.f90:4380
#7 0x4ABD9C in __chemistry_MOD_calc_pencils_chemistry at chemistry.f90:937
#5 0x44F6C7 in get_reaction_rate at chemistry.f90:4177 (discriminator 3)
#6 0x4457ED in calc_reaction_term at chemistry.f90:4380
#7 0x4ABD9C in __chemistry_MOD_calc_pencils_chemistry at chemistry.f90:937
#8 0xD18783 in rhs_cpu at equ.f90:799
#8 0xD18783 in rhs_cpu at equ.f90:799
#9 0xD1AA69 in __equ_MOD_pde at equ.f90:334
#10 0xD25BD2 in __pencil_check_MOD_pencil_consistency_check at pencil_check.f90:206 (discriminator 2)
#11 0xD32271 in run at run.f90:534
#8 0xD18783 in rhs_cpu at equ.f90:799
#9 0xD1AA69 in __equ_MOD_pde at equ.f90:334
#10 0xD25BD2 in __pencil_check_MOD_pencil_consistency_check at pencil_check.f90:206 (discriminator 2)
#9 0xD1AA69 in __equ_MOD_pde at equ.f90:334
#10 0xD25BD2 in __pencil_check_MOD_pencil_consistency_check at pencil_check.f90:206 (discriminator 2)
#11 0xD32271 in run at run.f90:534
#11 0xD32271 in run at run.f90:534
#8 0xD18783 in rhs_cpu at equ.f90:799
#9 0xD1AA69 in __equ_MOD_pde at equ.f90:334
#10 0xD25BD2 in __pencil_check_MOD_pencil_consistency_check at pencil_check.f90:206 (discriminator 2)
#11 0xD32271 in run at run.f90:534
--------------------------------------------------------------------------
mpiexec noticed that process rank 0 with PID 22453 on node lorraine exited on signal 8 (Floating point exception).
--------------------------------------------------------------------------
3 total processes killed (some possibly by mpiexec during cleanup)
'env MODULE_PREFIX=__ MODULE_INFIX=_MOD_ MODULE_SUFFIX= mpiexec -n 4 ./src/run.x' failed:
Aborting. ['\nice -n 15 pc_run --config-files=GNU-GCC_MPI+GNU-GCC_debug run' reported: ]
not ok:
Floating-point exception.
testing/samples/conv-slab: (64/72)
Compiling.. [double] ok 01:33
Starting.. ok 00:01
Running.. ok 00:55
Validating results.. ok
Time used: 02:29 = 01:33 + 00:56
testing/samples/interstellar: (65/72)
Compiling.. ok 01:37
Starting.. ok 00:00
Running.. ok 01:41
Validating results.. ok
Time used: 03:18 = 01:37 + 01:41
testing/samples/interlocked-fluxrings: (66/72)
Compiling.. [double] ok 01:48
Starting.. ok 00:01
Running.. ok 01:37
Validating results.. ok
Time used: 03:27 = 01:48 + 01:39
testing/samples/conv-slab-flat: (67/72)
Compiling.. ok 01:27
Starting.. ok 00:00
Running.. ok 00:50
Validating results.. ok
Time used: 02:18 = 01:27 + 00:50
testing/samples/coronae_heatflux_boris: (68/72)
Compiling.. ok 01:49
Starting.. ok 00:01
Running.. ok 00:22
Validating results..
----------------------------------------------------------------------
### auto-test failed ### Failed 5 test(s) out of 72:
/home/pencil/testing/samples/most-modules (running)/home/pencil/testing/samples/GravitationalWaves (results)/home/pencil/testing/samples/0d-tests/solar_system (results)/home/pencil/testing/samples/0d-tests/coagulation-fragmentation (running)/home/pencil/testing/samples/2d-tests/2d_methane_flame (running)
CPU time (including compilation): 02:01:43u 07:47s
Total wall-clock time: 02:15:18 = 01:34:54 + 39:46
----------------------------------------------------------------------
The following configuration has been used:
$config = {
'environment' => {
'MODULE_INFIX' => '_MOD_',
'MODULE_SUFFIX' => '',
'MODULE_PREFIX' => '__'
},
'makefile' => {
'LD_MPI' => '',
'LD_FFTW2' => '',
'F77' => 'mpif77',
'MAKE_VAR1' => '-j',
'CFLAGS' => '-DFUNDERSC=1',
'CFLAGS_FFTW2' => '',
'LD_FFTW3' => '',
'FSTD_2003' => '-std=f2003',
'FFLAGS_FFTW3' => '',
'CFLAGS_FFTW3' => '',
'CC' => 'mpicc',
'FFLAGS_DOUBLE' => '-fdefault-real-8 -fdefault-double-8',
'FFLAGS' => '-O -O0 -Wall -finit-real=NaN -finit-integer=-2147483648 -g -fbacktrace -fimplicit-none -fcheck=all -ffpe-trap=invalid,zero,overflow',
'FC' => 'mpif90',
'FFLAGS_FFTW2' => '',
'CFLAGS_DOUBLE' => '-DDOUBLE_PRECISION',
'FSTD_95' => '-std=f95',
'LDFLAGS_HELPER' => '-dynamic'
},
'runtime' => {
'mpiexec' => 'mpiexec',
'mpiexec_opts2' => '',
'mpiexec_opts' => ''
}
};
Perl version v5.18.2
Tue Aug 14 02:28:23 2018