Sat Sep 22 00:13:03 2018

bin/pencil-test --use-pc_auto-test --auto-test-options='--max-level=3,--config-files=GNU-GCC_MPI+GNU-GCC_debug' --pencil-home='/home/pencil/testing' --nice=15 --clean --short --local --html

Lorraine:


testing/samples/no-modules: (1/73)
    Compiling..            [double]           ok        00:52
    Starting..                                ok        00:00
    Running..                                 ok        00:00
    Validating results..                      ok      
    Time used:                                        00:53 = 00:52 + 00:00

testing/samples/most-modules: (2/73)
    Compiling..                               ok        02:14
    Starting..                                ok        00:01
    Running..                                 not ok:   00:03
hostname = lorraine
Non-MPI run
1 CPU
lparticles = 1
lpointmasses = 1
Subcommand: run
Revision: Last Changed Rev: 76067
Sat Sep 22 00:16:12 2018
Running 'env MODULE_PREFIX=__ MODULE_INFIX=_MOD_ MODULE_SUFFIX= ./src/run.x'...
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SVN: particles_dust.f90 v. 1.1     (2018/08/24 15:48:10) wlyra
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 The verbose level is ip=          14  (ldebug= F )
 This is a 3-D run
 nxgrid, nygrid, nzgrid=          32          32          32
 Lx, Ly, Lz=  0.128000006      0.128000006      0.128000006    
       Vbox=   2.09715241E-03
WARNING:  input_persistent_interstellar: t_next_SNI from run.in overwritten. Set l_persist_overwrite_tSNI=T to update
 input_persistent_interstellar: lSNI F t_next_SNI   0.00000000E+00
 input_persistent_interstellar: lSNII T t_next_SNII   0.00000000E+00
WARNING:  input_persistent_interstellar: t_next_SNII from run.in overwritten. Set l_persist_overwrite_tSNII=T to update
 input_persistent_interstellar: lSNI F t_next_SNI   0.00000000E+00
 input_persistent_interstellar: lSNII T t_next_SNII   0.00000000E+00
WARNING:  input_persistent_interstellar: x_cluster from run.in overwritten. Set l_persist_overwrite_xcluster=T to update
 input_persistent_interstellar: lSNI F t_next_SNI   0.00000000E+00
 input_persistent_interstellar: lSNII T t_next_SNII   0.00000000E+00
WARNING:  input_persistent_interstellar: y_cluster from run.in overwritten. Set l_persist_overwrite_ycluster=T to update
 input_persistent_interstellar: lSNI F t_next_SNI   0.00000000E+00
 input_persistent_interstellar: lSNII T t_next_SNII   0.00000000E+00
WARNING:  input_persistent_interstellar: z_cluster from run.in overwritten. Set l_persist_overwrite_zcluster=T to update
 input_persistent_interstellar: lSNI F t_next_SNI   0.00000000E+00
 input_persistent_interstellar: lSNII T t_next_SNII   0.00000000E+00
WARNING:  input_persistent_interstellar: t_cluster from run.in overwritten. Set l_persist_overwrite_tcluster=T to update
 input_persistent_interstellar: lSNI F t_next_SNI   0.00000000E+00
 input_persistent_interstellar: lSNII T t_next_SNII   0.00000000E+00
WARNING:  input_persistent_interstellar: lSNI from run.in overwritten. Set l_persist_overwrite_lSNI=T to update
 input_persistent_interstellar: lSNI F t_next_SNI   0.00000000E+00
 input_persistent_interstellar: lSNII T t_next_SNII   0.00000000E+00
WARNING:  input_persistent_interstellar: lSNII from run.in overwritten. Set l_persist_overwrite_lSNII=T to update
 input_persistent_interstellar: lSNI F t_next_SNI   0.00000000E+00
 input_persistent_interstellar: lSNII T t_next_SNII   0.00000000E+00
 input_persistent_interstellar: lSNI F t_next_SNI   0.00000000E+00
 input_persistent_interstellar: lSNII T t_next_SNII   0.00000000E+00
 input_persistent_forcing:    0.00000000E+00   0.00000000E+00   0.00000000E+00  -10.0000000    
 input_persistent_interstellar: lSNI F t_next_SNI   0.00000000E+00
 input_persistent_interstellar: lSNII T t_next_SNII   0.00000000E+00
 input_persistent_forcing:    0.00000000E+00   0.00000000E+00   0.00000000E+00  -10.0000000    
 units_general: unit_velocity=   97781.229948950713     
 units_general: unit_density=   1.6728000000000004E-024
 units_general: unit_length=   3.0856775800000002E+021
 units_general: unit_magnetic=   4.4831415428248343E-007
 initialize_eos: ENTER
 initialize_gravity: no x-gravity
 initialize_gravity: no y-gravity
 initialize_gravity: constant gravz=   0.00000000E+00
 diffusion: nothing (i.e. no mass diffusion)
 initialize_energy: cs2top,cs2cool=   3.90849994E+37   0.00000000E+00
 initialize_energy: now set cs2cool=cs2top
 initialize_energy: nheatc_max,iheatcond=           4 nothing                  nothing                  nothing                  nothing                  
 heat conduction: nothing
 resistivity: constant eta
WARNING:  initialize_magnetic: Resistivity coefficient eta is zero!
 lalpha_aniso= F
 lalpha_tensor= F
 initialize_magn_mf: lweyl_gauge= F
 calc_angle_weights: correction_factor =  0.333333343    
 initialize_radiation: ndir =           2
 initialize_dustvelocity: dust_chemistry = nothing                  
 recalculated: md0=   1.00000000    
 initialize_dustvelocity: ad=  0.620350480    
 initialize_dustvelocity: doing nothing
 initialize_dustvelocity: dust geometry = sphere
 initialize_dustdensity: ldustcoagulation,ldustcondensation = F F
 initialize_dustdensity: ldustcoagulation_simplified,ldustcondensation_simplified = F F
 initialize_dustdensity: ldustcoagulation,ldustcondensation = F F
 advec_ddensity: plain vanilla scheme
 initialize_dustdensity: diffnd=   0.00000000E+00
 dust diffusion: nothing
 gammacr1=  0.333333373    
WARNING:  initialize_cosmicray: using obsolescent parameters Kpara and Kperp! In the future, please use K_para and K_perp instead.
WARNING:  initialize_cosmicrayflux: parameter tau was set to zero!
WARNING:  initialize_cosmicrayflux: using obsolescent parameters kpara and kperp!Please set K_para/K_perp at the Cosmicray module instead.
 initialize_interstellar: t_next_SNI   0.00000000E+00
 initialize_interstellar: solar_mass (code) =   4.04705496E-08
 initialize_interstellar: eampl_SN, kampl_SN =    0.00000000E+00   0.00000000E+00
 initialize_interstellar: WSW cooling fct
 initialize_interstellar: unit_Lambda   1.81122293E+17
 initialize_interstellar: unit_Gamma   3.02981391E-07
 initialize_interstellar: t_interval_SNI, SNI rate =   1.52619993E-02   3999.15820    
 initialize_interstellar: average_SNI_heating = 0
 initialize_interstellar: average_SNII_heating =0
 initialize_interstellar: t_next_SNI, t_next_SNII=   0.00000000E+00   0.00000000E+00
 initialize_shock: prenormalised shock_factor sum=   1.00000000    
 initialize_particles: dust-to-gas ratio eps_dtog=   1.00000000    
 initialize_particles: mass per constituent particle mpmat=   0.00000000E+00
 initialize_particles: mass per superparticle mp_swarm =   4.01060570E-05
 initialize_particles: number density per superparticle np_swarm=   0.00000000E+00
 initialize_particles: mass density per superparticle rhop_swarm=   626.657043    
 initialize particles: set minimum collisional time-scale equal to two times the Courant time-step.
 initialize_particles_map: selected cloud-in-cell for particle-mesh method. 
 initialize_particles_radius: mass per dust grain mpmat=   0.00000000E+00
 pencil_consistency_check: checking pencil case
 dnpswarm_dt_pencil: Calculate dnpswarm_dt
At line 274 of file particles_selfgravity.f90 dxxp_dt: Calculate dxxp_dt
 dxxp_dt: Particles boundary condition bcpx=p      
 dxxp_dt: Particles boundary condition bcpy=p      
 dxxp_dt: Particles boundary condition bcpz=p      
 dxxp_dt: Set rate of change of particle position equal to particle velocity.
 dvvp_dt: Calculate dvvp_dt
 dvvp_dt: Calculating gravity
 dvvp_dt: No gravity in x-direction.
 dvvp_dt: No gravity in z-direction.
 dvvp_dt: No radial gravity
 dvvp_dt_selfgrav: add self-gravity

Fortran runtime warning: An array temporary was created for argument 'xxp' of procedure 'interpolate_linear_range'
At line 274 of file particles_selfgravity.f90
Fortran runtime warning: An array temporary was created for argument 'inear' of procedure 'interpolate_linear_range'
At line 1085 of file pointmasses.f90 dvvq_dt_pointmasses: Calculate dvvq_dt_pointmasses

Fortran runtime warning: An array temporary was created for argument 'xxq' of procedure 'get_evr'
At line 1043 of file pointmasses.f90 dvvp_dt_pointmasses: Finished dvvp_dt_pointmasses

Fortran runtime warning: An array temporary was created for argument 'fp_pt' of procedure 'gravity_pointmasses'
At line 1043 of file pointmasses.f90
Fortran runtime warning: An array temporary was created for argument 'dfp_pt' of procedure 'gravity_pointmasses'
 pencil_consistency_check: checking requested pencils
 pencil_consistency_check: performing small pencil check
At line 2578 of file hydro.f90
Fortran runtime warning: An array temporary was created for argument 'gradf' of procedure 'h_dot_grad_scl'
At line 3073 of file magnetic.f90
Fortran runtime warning: An array temporary was created for argument 'gradf' of procedure 'h_dot_grad_scl'

Program received signal SIGFPE: Floating-point exception - erroneous arithmetic operation.

Backtrace for this error:
#0  0x7FEA46200777
#1  0x7FEA46200D7E
#2  0x7FEA4571ACAF
#3  0x7FEA45F0DF28
#4  0x7FEA45F14A41
#5  0x4BA7DC in __dustdensity_MOD_calc_pencils_dustdensity at dustdensity.f90:1572 (discriminator 2)
#6  0x13412D5 in rhs_cpu at equ.f90:809
#7  0x134379A in __equ_MOD_pde at equ.f90:334
#8  0x134FE0B in __pencil_check_MOD_pencil_consistency_check at pencil_check.f90:206 (discriminator 2)
#9  0x135C965 in run at run.f90:534
'env MODULE_PREFIX=__ MODULE_INFIX=_MOD_ MODULE_SUFFIX= ./src/run.x' failed: 
Aborting. ['\nice -n 15 pc_run --config-files=GNU-GCC_MPI+GNU-GCC_debug run' reported: ]
 not ok: 
Floating-point exception.

testing/samples/backwards-compatible: (3/73)
    Compiling..                               ok        01:32
    Starting..                                ok        00:00
    Running..                                 ok        00:00
    Validating results..                      ok      
    Time used:                                        01:32 = 01:32 + 00:00

testing/samples/1d-tests/implicit_diffusion: (4/73)
    Compiling..                               ok        01:04
    Starting..                                ok        00:00
    Running..                                 ok        00:00
    Validating results..                      ok      
    Time used:                                        01:05 = 01:04 + 00:00

testing/samples/2d-tests/chemistry_GrayScott: (5/73)
    Compiling..                               ok        00:59
    Starting..                                ok        00:00
    Running..                                 ok        00:05
    Validating results..                      ok      
    Time used:                                        01:05 = 00:59 + 00:06

testing/samples/2d-tests/boussinesq_convection: (6/73)
    Compiling..                               ok        01:10
    Starting..                                ok        00:00
    Running..                                 ok        00:00
    Validating results..                      ok      
    Time used:                                        01:11 = 01:10 + 00:00

testing/samples/2d-tests/selfgravitating-shearwave: (7/73)
    Compiling..                               ok        01:17
    Starting..                                ok        00:01
    Running..                                 ok        00:12
    Validating results..                      ok      
    Time used:                                        01:30 = 01:17 + 00:13

testing/samples/2d-tests/shearwave-dust-par: (8/73)
    Compiling..                               ok        01:23
    Starting..                                ok        00:01
    Running..                                 ok        00:18
    Validating results..                      ok      
    Time used:                                        01:43 = 01:23 + 00:19

testing/samples/0d-tests/heating_ionize: (9/73)
    Compiling..            [double]           ok        01:03
    Starting..                                ok        00:00
    Running..                                 ok        00:06
    Validating results..                      ok      
    Time used:                                        01:10 = 01:03 + 00:07

testing/samples/dust-vortex: (10/73)
    Compiling..                               ok        01:44
    Starting..                                ok        00:00
    Running..                                 ok        00:49
    Validating results..                      ok      
    Time used:                                        02:33 = 01:44 + 00:49

testing/samples/damped_alfven_waves: (11/73)
    Compiling..                               ok        01:36
    Starting..                                ok        00:01
    Running..                                 ok        01:59
    Validating results..                      ok      
    Time used:                                        03:37 = 01:36 + 02:00

testing/samples/2d-tests/streaming_instability: (12/73)
    Compiling..                               ok        01:23
    Starting..                                ok        00:01
    Running..                                 ok        00:59
    Validating results..                      ok      
    Time used:                                        02:24 = 01:23 + 01:01

testing/samples/helical-MHDturb: (13/73)
    Compiling..                               ok        01:52
    Starting..                                ok        00:00
    Running..                                 ok        01:51
    Validating results..                      ok      
    Time used:                                        03:43 = 01:52 + 01:51

testing/samples/0d-tests/heating_noionize: (14/73)
    Compiling..                               ok        01:02
    Starting..                                ok        00:00
    Running..                                 ok        00:00
    Validating results..                      ok      
    Time used:                                        01:02 = 01:02 + 00:00

testing/samples/1d-tests/H2_flamespeed: (15/73)
    Compiling..                               ok        01:10
    Starting..                                ok        00:00
    Running..                                 ok        00:05
    Validating results..                      ok      
    Time used:                                        01:16 = 01:10 + 00:05

testing/samples/chiral-diffusion: (16/73)
    Compiling..                               ok        00:53
    Starting..                                ok        00:00
    Running..                                 ok        00:00
    Validating results..                      ok      
    Time used:                                        00:53 = 00:53 + 00:00

testing/samples/cosmicray: (17/73)
    Compiling..                               ok        01:03
    Starting..                                ok        00:00
    Running..                                 ok        00:00
    Validating results..                      ok      
    Time used:                                        01:03 = 01:03 + 00:00

testing/samples/1d-tests/sod_10: (18/73)
    Compiling..                               ok        01:05
    Starting..                                ok        00:00
    Running..                                 ok        00:01
    Validating results..                      ok      
    Time used:                                        01:07 = 01:05 + 00:01

testing/samples/1d-tests/ambipolar_diffusion: (19/73)
    Compiling..                               ok        01:10
    Starting..                                ok        00:00
    Running..                                 ok        00:09
    Validating results..                      ok      
    Time used:                                        01:20 = 01:10 + 00:09

testing/samples/GravitationalWaves: (20/73)
    Compiling..                               ok        01:31
    Starting..                                ok        00:01
    Running..                                 ok        00:04
    Validating results..                      not ok: 
Files reference.out, data/time_series.dat differ:
  uxpt: Row 2: 5.706e-10 > -8.045e-09 according to absolute accuracy 1.5e-12
  uxp2: Row 2: 7.128e-10 > -7.868e-08 according to absolute accuracy 1.5e-12
Expected:  
 --it-----t--------dt-------uxpt-------uxp2--------EEM-------EEGW-------gg2m------hrms---  
    0    0.000  2.00E-02  0.000E+00  0.000E+00 4.9997E-01 0.0000E+00  0.00E+00  0.00E+00  
    1    0.020  2.00E-02  5.706E-10  7.128E-10 4.9997E-01 2.5117E-03  2.53E-01  5.03E-03  
    2    0.040  2.00E-02  1.123E-09  1.395E-09 4.9997E-01 1.0031E-02  1.01E+00  2.01E-02  
    3    0.060  2.00E-02  1.638E-09  2.017E-09 4.9997E-01 2.2509E-02  2.26E+00  4.52E-02  
    4    0.080  2.00E-02  2.099E-09  2.548E-09 4.9997E-01 3.9866E-02  4.01E+00  8.03E-02  
    5    0.100  2.00E-02  2.486E-09  2.958E-09 4.9997E-01 6.1992E-02  6.23E+00  1.25E-01  
    6    0.120  2.00E-02  2.781E-09  3.217E-09 4.9997E-01 8.8746E-02  8.92E+00  1.80E-01  
    7    0.140  2.00E-02  2.968E-09  3.296E-09 4.9997E-01 1.1995E-01  1.21E+01  2.45E-01  
    8    0.160  2.00E-02  3.027E-09  3.166E-09 4.9997E-01 1.5542E-01  1.56E+01  3.19E-01  
    9    0.180  2.00E-02  2.943E-09  2.798E-09 4.9997E-01 1.9491E-01  1.96E+01  4.03E-01
Got:  
 --it-----t--------dt-------uxpt-------uxp2--------EEM-------EEGW-------gg2m------hrms---  
    0    0.000  2.00E-02  0.000E+00  0.000E+00 4.9997E-01 0.0000E+00  0.00E+00  0.00E+00  
    1    0.020  2.00E-02 -8.045E-09 -7.868E-08 4.9997E-01 2.5117E-03  2.53E-01  5.03E-03  
    2    0.040  2.00E-02 -1.608E-08 -1.574E-07 4.9997E-01 1.0031E-02  1.01E+00  2.01E-02  
    3    0.060  2.00E-02 -2.409E-08 -2.360E-07 4.9997E-01 2.2509E-02  2.26E+00  4.52E-02  
    4    0.080  2.00E-02 -3.207E-08 -3.147E-07 4.9997E-01 3.9866E-02  4.01E+00  8.03E-02  
    5    0.100  2.00E-02 -4.001E-08 -3.934E-07 4.9997E-01 6.1992E-02  6.23E+00  1.25E-01  
    6    0.120  2.00E-02 -4.790E-08 -4.690E-07 4.9997E-01 8.8746E-02  8.92E+00  1.80E-01  
    7    0.140  2.00E-02 -5.573E-08 -5.419E-07 4.9997E-01 1.1995E-01  1.21E+01  2.45E-01  
    8    0.160  2.00E-02 -6.348E-08 -6.148E-07 4.9997E-01 1.5542E-01  1.56E+01  3.19E-01  
    9    0.180  2.00E-02 -7.116E-08 -6.798E-07 4.9997E-01 1.9491E-01  1.96E+01  4.03E-01
    Time used:                                        01:37 = 01:31 + 00:05

testing/samples/polymer/forced_3dturbulence: (21/73)
    Compiling..                               ok        01:26
    Starting..                                ok        00:00
    Running..                                 ok        00:17
    Validating results..                      ok      
    Time used:                                        01:43 = 01:26 + 00:17

testing/samples/testfield_z: (22/73)
    Compiling..                               ok        01:30
    Starting..                                ok        00:00
    Running..                                 ok        00:29
    Validating results..                      ok      
    Time used:                                        01:59 = 01:30 + 00:29

testing/samples/random_uu_particles: (23/73)
    Compiling..                               ok        01:42
    Starting..                                ok        00:00
    Running..                                 ok        02:06
    Validating results..                      ok      
    Time used:                                        03:49 = 01:42 + 02:07

testing/samples/1d-tests/solar-atmosphere-temperature: (24/73)
    Compiling..            [double]           ok        01:03
    Starting..                                ok        00:00
    Running..                                 ok        00:18
    Validating results..                      ok      
    Time used:                                        01:21 = 01:03 + 00:18

testing/samples/kin-dynamo: (25/73)
    Compiling..                               ok        01:02
    Starting..                                ok        00:00
    Running..                                 ok        00:18
    Validating results..                      ok      
    Time used:                                        01:21 = 01:02 + 00:18

testing/samples/meissner: (26/73)
    Compiling..            [double]           ok        01:34
    Starting..                                ok        00:00
    Running..                                 ok        00:31
    Validating results..                      ok      
    Time used:                                        02:06 = 01:34 + 00:32

testing/samples/conv-slab-noequi: (27/73)
    Compiling..                               ok        01:28
    Starting..                                ok        00:00
    Running..                                 ok        00:47
    Validating results..                      ok      
    Time used:                                        02:16 = 01:28 + 00:48

testing/samples/corona: (28/73)
    Compiling..                               ok        01:54
    Starting..                                ok        00:02
    Running..                                 ok        02:38
    Validating results..                      ok      
    Time used:                                        04:35 = 01:54 + 02:40

testing/samples/2d-tests/globaldisc: (29/73)
    Compiling..                               ok        01:09
    Starting..                                ok        00:00
    Running..                                 ok        00:46
    Validating results..                      ok      
    Time used:                                        01:56 = 01:09 + 00:46

testing/samples/2d-tests/cylindrical_gdisk: (30/73)
    Compiling..                               ok        01:08
    Starting..                                ok        00:00
    Running..                                 ok        00:00
    Validating results..                      ok      
    Time used:                                        01:08 = 01:08 + 00:00

testing/samples/2d-tests/planet-disk-fargo: (31/73)
    Compiling..                               ok        01:19
    Starting..                                ok        00:01
    Running..                                 ok        00:02
    Validating results..                      ok      
    Time used:                                        01:23 = 01:19 + 00:04

testing/samples/spherical-globaldisk: (32/73)
    Compiling..                               ok        01:32
    Starting..                                ok        00:01
    Running..                                 ok        00:02
    Validating results..                      ok      
    Time used:                                        01:35 = 01:32 + 00:03

testing/samples/spherical-globaldisk-mhd: (33/73)
    Compiling..                               ok        01:38
    Starting..                                ok        00:01
    Running..                                 ok        00:05
    Validating results..                      ok      
    Time used:                                        01:46 = 01:38 + 00:07

testing/samples/spherical-gdisk-planet-thermo: (34/73)
    Compiling..                               ok        01:37
    Starting..                                ok        00:01
    Running..                                 ok        00:47
    Validating results..                      ok      
    Time used:                                        02:26 = 01:37 + 00:49

testing/samples/0d-tests/solar_system: (35/73)
    Compiling..                               ok        01:19
    Starting..                                ok        00:01
    Running..                                 ok        00:02
    Validating results..                      ok      
    Time used:                                        01:23 = 01:19 + 00:03

testing/samples/mdwarf: (36/73)
    Compiling..                               ok        01:34
    Starting..                                ok        00:00
    Running..                                 ok        01:22
    Validating results..                      ok      
    Time used:                                        02:56 = 01:34 + 01:22

testing/samples/sedimentation: (37/73)
    Compiling..                               ok        01:54
    Starting..                                ok        00:01
    Running..                                 ok        02:15
    Validating results..                      ok      
    Time used:                                        04:11 = 01:54 + 02:17

testing/samples/MRI-turbulence_hyper: (38/73)
    Compiling..            [double]           ok        01:40
    Starting..                                ok        00:01
    Running..                                 ok        01:01
    Validating results..                      ok      
    Time used:                                        02:43 = 01:40 + 01:02

testing/samples/dust_turb_globaldisk: (39/73)
    Compiling..                               ok        01:51
    Starting..                                ok        00:01
    Running..                                 ok        03:39
    Validating results..                      ok      
    Time used:                                        05:31 = 01:51 + 03:40

testing/samples/geodynamo: (40/73)
    Compiling..                               ok        01:40
    Starting..                                ok        00:01
    Running..                                 ok        04:50
    Validating results..                      ok      
    Time used:                                        06:32 = 01:40 + 04:52

testing/samples/2d-tests/cylinder_deposition: (41/73)
    Compiling..                               ok        01:24
    Starting..                                ok        00:00
    Running..                                 ok        00:10
    Validating results..                      ok      
    Time used:                                        01:35 = 01:24 + 00:11

testing/samples/2d-tests/selfgravdisk-deadzone-dust: (42/73)
    Compiling..                               ok        01:30
    Starting..                                ok        00:01
    Running..                                 ok        00:27
    Validating results..                      ok      
    Time used:                                        01:59 = 01:30 + 00:28

testing/samples/2d-tests/spherical_viscous_ring: (43/73)
    Compiling..                               ok        01:05
    Starting..                                ok        00:00
    Running..                                 ok        00:03
    Validating results..                      ok      
    Time used:                                        01:09 = 01:05 + 00:03

testing/samples/2d-tests/field-loop-fargo: (44/73)
    Compiling..                               ok        01:24
    Starting..                                ok        00:01
    Running..                                 ok        00:09
    Validating results..                      ok      
    Time used:                                        01:35 = 01:24 + 00:11

testing/samples/baroclinic: (45/73)
    Compiling..                               ok        01:41
    Starting..                                ok        00:01
    Running..                                 ok        01:25
    Validating results..                      ok      
    Time used:                                        03:08 = 01:41 + 01:26

testing/samples/1d-tests/sedimentation-noneq-blocks: (46/73)
    Compiling..                               ok        01:25
    Starting..                                ok        00:01
    Running..                                 ok        00:10
    Validating results..                      ok      
    Time used:                                        01:36 = 01:25 + 00:11

testing/samples/1d-tests/alphadisk: (47/73)
    Compiling..                               ok        00:59
    Starting..                                ok        00:03
    Running..                                 ok        00:19
    Validating results..                      ok      
    Time used:                                        01:22 = 00:59 + 00:23

testing/samples/implicit_resistivity: (48/73)
    Compiling..                               ok        01:26
    Starting..                                ok        00:00
    Running..                                 ok        00:20
    Validating results..                      ok      
    Time used:                                        01:46 = 01:26 + 00:20

testing/samples/debris-photoelectric-fluid: (49/73)
    Compiling..                               ok        01:32
    Starting..                                ok        00:00
    Running..                                 ok        00:10
    Validating results..                      ok      
    Time used:                                        01:42 = 01:32 + 00:10

testing/samples/2d-tests/debris-photoeletric-streaming: (50/73)
    Compiling..                               ok        01:23
    Starting..                                ok        00:01
    Running..                                 ok        00:09
    Validating results..                      ok      
    Time used:                                        01:33 = 01:23 + 00:10

testing/samples/2d-tests/Kelvin-Helmholtz: (51/73)
    Compiling..                               ok        01:14
    Starting..                                ok        00:01
    Running..                                 ok        00:01
    Validating results..                      ok      
    Time used:                                        01:17 = 01:14 + 00:03

testing/samples/2d-tests/selfgravdisk-planet-dust: (52/73)
    Compiling..                               ok        01:31
    Starting..                                ok        00:01
    Running..                                 ok        00:28
    Validating results..                      ok      
    Time used:                                        02:01 = 01:31 + 00:29

testing/samples/cylindrical-globaldisk-dzone: (53/73)
    Compiling..                               ok        02:01
    Starting..                                ok        00:01
    Running..                                 ok        00:10
    Validating results..                      ok      
    Time used:                                        02:13 = 02:01 + 00:12

testing/samples/2d-tests/selfgravdisk-logspirals: (54/73)
    Compiling..                               ok        01:12
    Starting..                                ok        00:00
    Running..                                 ok        00:03
    Validating results..                      ok      
    Time used:                                        01:16 = 01:12 + 00:03

testing/samples/2d-tests/turbulent_potential: (55/73)
    Compiling..                               ok        01:16
    Starting..                                ok        00:01
    Running..                                 ok        00:10
    Validating results..                      ok      
    Time used:                                        01:28 = 01:16 + 00:11

testing/samples/0d-tests/coagulation-fragmentation: (56/73)
    Compiling..                               ok        01:08
    Starting..                                ok        00:00
    Running..                                 not ok:   00:00
hostname = lorraine
Non-MPI run
1 CPU
lparticles = 1
lpointmasses = 0
Subcommand: run
Revision: Last Changed Rev: 76067
Sat Sep 22 02:06:06 2018
Running 'env MODULE_PREFIX=__ MODULE_INFIX=_MOD_ MODULE_SUFFIX= ./src/run.x'...
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SVN: particles_dust.f90 v. 1.1     (2018/08/24 15:48:10) wlyra
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 The verbose level is ip=          14  (ldebug= F )
 This is a 0-D run
 nxgrid, nygrid, nzgrid=           1           1           1
 Lx, Ly, Lz=   6.2831853071795862        6.2831853071795862        6.2831853071795862     
       Vbox=   1.0000000000000000     
 WARNING: uxmy, uymy, uzmy, ux2my, uy2my, uz2my, uxuymy, uxuzmy, uyuzmy diagnostic(s) in xzaver.in not defined!
 WARNING: uxmz, uymz, uzmz, ux2mz, uy2mz, uz2mz, uxuymz, uxuzmz, uyuzmz diagnostic(s) in xyaver.in not defined!
 setup_slices: slice_position = p
 setup_slices: ix_loc,iy_loc,iz_loc,iz2_loc, (video files) = 4 4 4 4                                                                         
 units_general: unit_velocity=   1.0000000000000000     
 units_general: unit_density=   1.0000000000000000     
 units_general: unit_length=   1.0000000000000000     
 units_general: unit_magnetic=   3.5449077018110318     
 units_eos: unit_temperature=   1.2027220936797545E-008
 units_eos: cp, lnTT0, cs0, pp0=   1.0000000000000000        0.0000000000000000E+000   1.0000000000000000        1.0000000000000000     
 initialize_density: no hydro, turned off continuity equation
 initialize_density: 0-D run, turned off continuity equation
 diffusion: nothing (i.e. no mass diffusion)
 select_eos_variable: Using rho and cs2
 initialize_particles: Global pressure gradient with beta_dPdr_dust= -0.10000000000000001     
 initialize_particles: dust-to-gas ratio eps_dtog=   1.0000000000000000     
 initialize_particles: mass per constituent particle mpmat=   4.1887902047863905     
 initialize_particles: mass per superparticle mp_swarm =   1.0000000000000000E-002
 initialize_particles: number density per superparticle np_swarm=   0.0000000000000000E+000
 initialize_particles: mass density per superparticle rhop_swarm=   1.0000000000000000E-002
 initialize particles: set minimum collisional time-scale equal to two times the Courant time-step.
 initialize_particles_map: selected cloud-in-cell for particle-mesh method. 
 initialize_particles_radius: mass per dust grain mpmat=   4.1887902047863905     
 pencil_consistency_check: checking pencil case
 dnpswarm_dt_pencil: Calculate dnpswarm_dt
 dxxp_dt: Calculate dxxp_dt
 dxxp_dt: Particles boundary condition bcpx=p      
 dxxp_dt: Particles boundary condition bcpy=p      
 dxxp_dt: Particles boundary condition bcpz=p      
 dxxp_dt: Set rate of change of particle position equal to particle velocity.
 dvvp_dt: Calculate dvvp_dt
 dvvp_dt: Calculating gravity
 dvvp_dt: No gravity in x-direction.
 dvvp_dt: No gravity in z-direction.
 dvvp_dt: No radial gravity
 pencil_consistency_check: checking requested pencils
 pencil_consistency_check: performing small pencil check
 pencil_consistency_check: the small pencil check reported no problems
 pencil_consistency_check: performing full pencil check (takes a while)
 pencil_consistency_check: possible overcalculation... pencil rho (   4) is requested, but does not appear to be required!
 pencil_consistency_check: possible overcalculation... pencil cs2 (  41) is requested, but does not appear to be required!
 pencil_consistency_check: checking dependence on pencil initialization
 pencil_consistency_check: results are independent of pencil initialization
 pencil_consistency_check: checking diagnostics pencils
 pencil_consistency_check: performing small pencil check
 pencil_consistency_check: the small pencil check has found one or more
                           MISSING diagnostics pencils. This could be a serious problem.
 pencil_consistency_check: the full pencil check beginning now will find
                           out which pencils are missing
 pencil_consistency_check: performing full pencil check (takes a while)
pencil_consistency_check: MISSING PENCIL... pencil Ywater (   1) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil lambda (   2) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil lnrho (   3) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil glnrho (   6) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil grho (   7) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uglnrho (   8) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ugrho (   9) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil glnrho2 (  10) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2lnrho (  11) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2rho (  12) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del6lnrho (  13) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del6rho (  14) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil hlnrho (  15) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil sglnrho (  16) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uij5glnrho (  17) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil transprho (  18) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ekin (  19) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uuadvec_glnrho (  20) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uuadvec_grho (  21) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rhos1 (  22) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil glnrhos (  23) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rhod (  24) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil udropav (  25) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rhodsum (  26) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil glnrhodsum (  27) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uud (  28) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil divud (  29) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil sdij (  30) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil Ma2 (  31) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil fpres (  32) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil tcond (  33) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil sglnTT (  34) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uglnTT (  35) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ss (  36) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil gss (  37) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ee (  38) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil pp (  39) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil lnTT (  40) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil cp (  42) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil cp1 (  43) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil cp1tilde (  44) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil glnTT (  45) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil TT (  46) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil TT1 (  47) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil gTT (  48) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil yH (  49) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil hss (  50) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil hlnTT (  51) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2ss (  52) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del6ss (  53) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2lnTT (  54) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil cv (  55) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil cv1 (  56) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del6lnTT (  57) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil gamma (  58) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2TT (  59) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del6TT (  60) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil glnmumol (  61) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ppvap (  62) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil csvap2 (  63) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil TTb (  64) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rho_anel (  65) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil eth (  66) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil geth (  67) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2eth (  68) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil heth (  69) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil eths (  70) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil geths (  71) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rho1gpp (  72) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil fcont (  73) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil gg (  74) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil x_mn (  75) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil y_mn (  76) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil z_mn (  77) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil r_mn (  78) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil r_mn1 (  79) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil phix (  80) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil phiy (  81) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil pomx (  82) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil pomy (  83) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rcyl_mn (  84) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rcyl_mn1 (  85) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil phi_mn (  86) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil evr (  87) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rr (  88) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil evth (  89) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil u2 (  91) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil oo (  92) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ou (  93) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uij (  94) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil sij (  95) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil sij2 (  96) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil divu (  97) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uij5 (  98) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil graddivu (  99) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ugu ( 100) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ogu ( 101) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2u ( 102) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil curlo ( 103) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uu_advec ( 104) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil bb ( 105) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil bij ( 106) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil jxbr ( 107) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ss12 ( 108) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil b2 ( 109) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uxb ( 110) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil jj ( 111) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil aa ( 112) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil diva ( 113) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2a ( 114) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil aij ( 115) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil bunit ( 116) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil mf_EMF ( 117) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil mf_EMFdotB ( 118) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uun ( 119) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil divun ( 120) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil snij ( 121) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil rhop ( 123) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil vol ( 124) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil peh ( 125) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uup ( 126) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil np_rad ( 127) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil npvz ( 128) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil npvz2 ( 129) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil npuz ( 130) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil sherwood ( 131) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil epsp ( 132) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil grhop ( 133) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil tauascalar ( 134) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil condensationRate ( 135) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil waterMixingRatio ( 136) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil lncc ( 139) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil glncc ( 140) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil uglncc ( 141) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2lncc ( 142) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil hlncc ( 143) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil shock ( 144) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil gshock ( 145) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil shock_perp ( 146) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil gshock_perp ( 147) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil acc ( 148) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil gacc ( 149) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ugacc ( 150) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil del2acc ( 151) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil ssat ( 152) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil fvisc ( 153) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil diffus_total ( 154) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil diffus_total2 ( 155) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil diffus_total3 ( 156) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil visc_heat ( 157) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil nu ( 158) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil gradnu ( 159) is not requested for diagnostics, but calculating it changes the diagnostics!
pencil_consistency_check: MISSING PENCIL... pencil nu_smag ( 160) is not requested for diagnostics, but calculating it changes the diagnostics!
 pencil_consistency_check: set lpencil_check_diagnos_opti=T in run.in to report
 pencil_consistency_check: optimisation possibilities for diagnostics pencils
 pencil_consistency_check: checking dependence on pencil initialization
STOPPED: pencil_consistency_check: one or more tests failed
 pencil_consistency_check: diagnostics depend on pencil initialization
                           This is a serious problem that may show the use of
                           uninitialized pencils. Check carefully that all
                           pencils are calculated and that conjugate pencils are
                           calculated *after* the individual components
STOP 1
'env MODULE_PREFIX=__ MODULE_INFIX=_MOD_ MODULE_SUFFIX= ./src/run.x' failed: 
Aborting. ['\nice -n 15 pc_run --config-files=GNU-GCC_MPI+GNU-GCC_debug run' reported: ]
 not ok: 
Pencil consistency check failed.

testing/samples/0d-tests/heating_ionize_planck: (57/73)
    Compiling..            [double]           ok        01:05
    Starting..                                ok        00:00
    Running..                                 ok        00:00
    Validating results..                      ok      
    Time used:                                        01:05 = 01:05 + 00:00

testing/samples/1d-tests/jeans-drag-dustpar-x: (58/73)
    Compiling..                               ok        01:14
    Starting..                                ok        00:00
    Running..                                 ok        00:00
    Validating results..                      ok      
    Time used:                                        01:14 = 01:14 + 00:00

testing/samples/1d-tests/jeans-x: (59/73)
    Compiling..                               ok        01:08
    Starting..                                ok        00:00
    Running..                                 ok        00:00
    Validating results..                      ok      
    Time used:                                        01:09 = 01:08 + 00:00

testing/samples/1d-tests/sod_10s: (60/73)
    Compiling..                               ok        01:07
    Starting..                                ok        00:00
    Running..                                 ok        00:01
    Validating results..                      ok      
    Time used:                                        01:08 = 01:07 + 00:01

testing/samples/1d-tests/toomre-x: (61/73)
    Compiling..                               ok        01:08
    Starting..                                ok        00:00
    Running..                                 ok        00:00
    Validating results..                      ok      
    Time used:                                        01:08 = 01:08 + 00:00

testing/samples/2d-tests/bubble: (62/73)
    Compiling..                               ok        01:08
    Starting..                                not ok:   00:00
hostname = lorraine
Non-MPI run
1 CPU
lparticles = 0
lpointmasses = 0
Subcommand: start
Revision: Last Changed Rev: 76067
Sat Sep 22 02:13:02 2018
Running 'env MODULE_PREFIX=__ MODULE_INFIX=_MOD_ MODULE_SUFFIX= ./src/start.x'...
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$               
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
 nxgrid, nygrid, nzgrid=         128           1          64
 units_general: unit_velocity=   1.0000000000000000     
 units_general: unit_density=   1.0000000000000000     
 units_general: unit_length=   1.0000000000000000     
 units_general: unit_magnetic=   3.5449078083038330     
 units_eos: unit_temperature=   4.8108880235694808E-009
 units_eos: cp, lnTT0, cs0, pp0=   1.00000000      0.405465186       1.00000000      0.600000024    
 initialize_gravity: no x-gravity
 initialize_gravity: no y-gravity
 initialize_gravity: constant gravz=  -1.00000000    
 diffusion: nothing (i.e. no mass diffusion)
 select_eos_variable: Using lnrho and ss
 initialize_energy: nheatc_max,iheatcond=           4 nothing                  nothing                  nothing                  nothing                  
 heat conduction: nothing
 init_uu: nothing
 isothermal_density: isothermal stratification
 init_lnrho: initlnrho(1) = isothermal
 init_lnrho: cs2bot,cs2top=   1.00000000       1.00000000    
 init_energy: put blob in hydrostatic equilibrium: radius_ss,ampl_ss=   5.00000007E-02 -0.200000003    
STOP 1
 init_energy: initss(1) = blob_hs
FATAL ERROR:  boundconds_z: hs boundary condition requires density or pressure
'env MODULE_PREFIX=__ MODULE_INFIX=_MOD_ MODULE_SUFFIX= ./src/start.x' failed: 
Aborting.
Found ERROR file from start.x ['\nice -n 15 pc_run --config-files=GNU-GCC_MPI+GNU-GCC_debug start' reported: ]
    Time used:                                        undef = 01:08 + undef

testing/samples/2d-tests/conv-slab-MLT: (63/73)
    Compiling..                               ok        01:09
    Starting..                                ok        00:00
    Running..                                 ok        00:01
    Validating results..                      ok      
    Time used:                                        01:10 = 01:09 + 00:01

testing/samples/2d-tests/2d_methane_flame: (64/73)
    Compiling..                               ok        01:19
    Starting..                                ok        00:04
    Running..                                 not ok:   00:27
hostname = lorraine
MPI run
4 CPUs
4 nodes, 1 CPU per node
lparticles = 0
lpointmasses = 0
Subcommand: run
Revision: Last Changed Rev: 76067
Sat Sep 22 02:15:36 2018
Running under MPI
Running 'env MODULE_PREFIX=__ MODULE_INFIX=_MOD_ MODULE_SUFFIX= mpiexec -n 4 ./src/run.x'...
SVN: -------            v.         (                   ) $Id$
SVN: start.in,v         v. 1.1     (2010-05-19 14:36:03) nilshau
 Read inlet data from file!
 Read inlet data from file!
 Read inlet data from file!
 Read inlet data from file!
SVN: run.in,v           v. 1.1     (2010-05-19 14:36:03) nilshau
 initialize_mpicomm: enabled MPI
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
 Write pc_constants.pro in chemistry.f90
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
SVN: -------            v.         (                   ) $Id$
 The verbose level is ip=          14  (ldebug= F )
 This is a 2-D run
 nxgrid, nygrid, nzgrid=         512          16           1
 Lx, Ly, Lz=  0.50000000000000000       0.50000000000000000       0.10000000000000001     
       Vbox=  0.25000000000000000     
 WARNING: Y6m diagnostic(s) in print.in not defined!
 setup_slices: slice_position = p
 setup_slices: ix_loc,iy_loc,iz_loc,iz2_loc, (video files) = 4 4 4 4                                                                         
 units_general: unit_velocity=   1.0000000000000000     
 units_general: unit_density=   1.0000000000000000     
 units_general: unit_length=   1.0000000000000000     
 units_general: unit_magnetic=   3.5449077018110318     
 units_eos: chem.imp is found! Now cp, cv, gamma, mu are pencils ONLY!
 diffusion: nothing (i.e. no mass diffusion)
 select_eos_variable: Using lnrho and lnTT
 heat conduction: nothing
 heat conduction: nothing
 heat conduction: nothing
 tran.in/dat file with transport data is found.
 the following species are found in tran.in/dat: beginning of the list:
 CH2O       ind_glob=          20  ind_chem=          15
 CH3        ind_glob=          18  ind_chem=          13
 CH3O       ind_glob=          21  ind_chem=          16
 CH4        ind_glob=          14  ind_chem=           9
 CO         ind_glob=          15  ind_chem=          10
 CO2        ind_glob=          16  ind_chem=          11
 H          ind_glob=           8  ind_chem=           3
 H2         ind_glob=           7  ind_chem=           2
 H2O        ind_glob=          12  ind_chem=           7
 H2O2       ind_glob=          17  ind_chem=          12
 HCO        ind_glob=          19  ind_chem=          14
 HO2        ind_glob=          13  ind_chem=           8
 N2         ind_glob=           6  ind_chem=           1
 O          ind_glob=           9  ind_chem=           4
 O2         ind_glob=          10  ind_chem=           5
 OH         ind_glob=          11  ind_chem=           6
 the following species are found in tran.dat: end of the list:
 lewis.dat file with transport data is found.
 Species diffusion coefficients calculated using constant Lewis numbers.
 lewis.dat: beginning of the list:
 N2         ind_glob=           6  Lewis=   1.0000000000000000     
 H2         ind_glob=           7  Lewis=  0.29999999999999999     
 H          ind_glob=           8  Lewis=  0.17999999999999999     
 O          ind_glob=           9  Lewis=  0.69999999999999996     
 O2         ind_glob=          10  Lewis=   1.1100000000000001     
 OH         ind_glob=          11  Lewis=  0.72999999999999998     
 H2O        ind_glob=          12  Lewis=  0.82999999999999996     
 HO2        ind_glob=          13  Lewis=   1.1000000000000001     
 CH4        ind_glob=          14  Lewis=  0.96999999999999997     
 CO         ind_glob=          15  Lewis=   1.1000000000000001     
 CO2        ind_glob=          16  Lewis=   1.3899999999999999     
 H2O2       ind_glob=          17  Lewis=   1.1200000000000001     
 CH3        ind_glob=          18  Lewis=   1.0000000000000000     
 HCO        ind_glob=          19  Lewis=   1.2700000000000000     
 CH2O       ind_glob=          20  Lewis=   1.2800000000000000     
 CH3O       ind_glob=          21  Lewis=   1.3000000000000000     
 lewis.dat: end of the list:
 Number of reactions=          35
 Number of species=          16
 Reinitializing chemistry.
 Reading initial conditions in file CH4_p01_0phi0_7000tu0300
 initchem: nothing 
 viscous force: nu is calculated for a mixture
 pencil_consistency_check: checking pencil case
 calc_for_chem_mixture: writing mix_quant.out file
 get_reaction_rate: writing react.out file
 pencil_consistency_check: checking requested pencils
 pencil_consistency_check: performing small pencil check
At line 2578 of file hydro.f90
Fortran runtime warning: An array temporary was created for argument 'gradf' of procedure 'h_dot_grad_scl'
At line 2578 of file hydro.f90
Fortran runtime warning: An array temporary was created for argument 'gradf' of procedure 'h_dot_grad_scl'
At line 2578 of file hydro.f90
Fortran runtime warning: An array temporary was created for argument 'gradf' of procedure 'h_dot_grad_scl'
At line 2578 of file hydro.f90
Fortran runtime warning: An array temporary was created for argument 'gradf' of procedure 'h_dot_grad_scl'
 pencil_consistency_check: the small pencil check reported no problems
 pencil_consistency_check: performing full pencil check (takes a while)
 pencil_consistency_check: possible overcalculation... pencil cp1 (   4) is requested, but does not appear to be required!
 pencil_consistency_check: possible overcalculation... pencil gXXk (   6) is requested, but does not appear to be required!
 pencil_consistency_check: possible overcalculation... pencil gYYk (   9) is requested, but does not appear to be required!
 pencil_consistency_check: possible overcalculation... pencil lambda1 (  14) is requested, but does not appear to be required!
 pencil_consistency_check: possible overcalculation... pencil S0_R (  19) is requested, but does not appear to be required!
 pencil_consistency_check: possible overcalculation... pencil cs2 (  20) is requested, but does not appear to be required!
 pencil_consistency_check: possible overcalculation... pencil glnpp (  21) is requested, but does not appear to be required!
 pencil_consistency_check: possible overcalculation... pencil del2pp (  22) is requested, but does not appear to be required!
 pencil_consistency_check: possible overcalculation... pencil glnrho2 (  34) is requested, but does not appear to be required!
 pencil_consistency_check: possible overcalculation... pencil del2lnrho (  35) is requested, but does not appear to be required!

Program received signal SIGFPE: Floating-point exception - erroneous arithmetic operation.

Backtrace for this error:

Program received signal SIGFPE: Floating-point exception - erroneous arithmetic operation.

Backtrace for this error:

Program received signal SIGFPE: Floating-point exception - erroneous arithmetic operation.

Backtrace for this error:

Program received signal SIGFPE: Floating-point exception - erroneous arithmetic operation.

Backtrace for this error:
#0  0x7FF3F60A5777
#0  0x7F36DCAFC777
#0  0x7F113BFE8777
#0  0x7F5F27393777
#1  0x7FF3F60A5D7E
#2  0x7FF3F55BFCAF
#3  0x7FF3F5DE5870
#4  0x7FF3F5DABF62
#1  0x7F36DCAFCD7E
#2  0x7F36DC016CAF
#3  0x7F36DC83C870
#4  0x7F36DC802F62
#1  0x7F113BFE8D7E
#2  0x7F113B502CAF
#3  0x7F113BD28870
#4  0x7F113BCEEF62
#1  0x7F5F27393D7E
#2  0x7F5F268ADCAF
#3  0x7F5F270D3870
#4  0x7F5F27099F62
#5  0x44F707 in get_reaction_rate at chemistry.f90:4177 (discriminator 3)
#5  0x44F707 in get_reaction_rate at chemistry.f90:4177 (discriminator 3)
#5  0x44F707 in get_reaction_rate at chemistry.f90:4177 (discriminator 3)
#6  0x44582D in calc_reaction_term at chemistry.f90:4380
#7  0x4ABDDC in __chemistry_MOD_calc_pencils_chemistry at chemistry.f90:937
#8  0xD23028 in rhs_cpu at equ.f90:799
#6  0x44582D in calc_reaction_term at chemistry.f90:4380
#7  0x4ABDDC in __chemistry_MOD_calc_pencils_chemistry at chemistry.f90:937
#8  0xD23028 in rhs_cpu at equ.f90:799
#6  0x44582D in calc_reaction_term at chemistry.f90:4380
#7  0x4ABDDC in __chemistry_MOD_calc_pencils_chemistry at chemistry.f90:937
#8  0xD23028 in rhs_cpu at equ.f90:799
#9  0xD2530E in __equ_MOD_pde at equ.f90:334
#10  0xD30477 in __pencil_check_MOD_pencil_consistency_check at pencil_check.f90:206 (discriminator 2)
#5  0x44F707 in get_reaction_rate at chemistry.f90:4177 (discriminator 3)
#11  0xD3CB16 in run at run.f90:534
#9  0xD2530E in __equ_MOD_pde at equ.f90:334
#10  0xD30477 in __pencil_check_MOD_pencil_consistency_check at pencil_check.f90:206 (discriminator 2)
#6  0x44582D in calc_reaction_term at chemistry.f90:4380
#11  0xD3CB16 in run at run.f90:534
#7  0x4ABDDC in __chemistry_MOD_calc_pencils_chemistry at chemistry.f90:937
#8  0xD23028 in rhs_cpu at equ.f90:799
#9  0xD2530E in __equ_MOD_pde at equ.f90:334
#10  0xD30477 in __pencil_check_MOD_pencil_consistency_check at pencil_check.f90:206 (discriminator 2)
#11  0xD3CB16 in run at run.f90:534
--------------------------------------------------------------------------
mpiexec noticed that process rank 1 with PID 16612 on node lorraine exited on signal 8 (Floating point exception).
--------------------------------------------------------------------------
'env MODULE_PREFIX=__ MODULE_INFIX=_MOD_ MODULE_SUFFIX= mpiexec -n 4 ./src/run.x' failed: 
Aborting. ['\nice -n 15 pc_run --config-files=GNU-GCC_MPI+GNU-GCC_debug run' reported: ]
 not ok: 
Floating-point exception.

testing/samples/conv-slab: (65/73)
    Compiling..            [double]           ok        01:33
    Starting..                                ok        00:01
    Running..                                 ok        00:57
    Validating results..                      ok      
    Time used:                                        02:32 = 01:33 + 00:59

testing/samples/interstellar: (66/73)
    Compiling..                               ok        01:37
    Starting..                                ok        00:00
    Running..                                 ok        01:41
    Validating results..                      ok      
    Time used:                                        03:19 = 01:37 + 01:41

testing/samples/interlocked-fluxrings: (67/73)
    Compiling..            [double]           ok        01:47
    Starting..                                ok        00:01
    Running..                                 ok        01:40
    Validating results..                      ok      
    Time used:                                        03:29 = 01:47 + 01:42

testing/samples/conv-slab-flat: (68/73)
    Compiling..                               ok        01:27
    Starting..                                ok        00:00
    Running..                                 ok        00:50
    Validating results..                      ok      
    Time used:                                        02:18 = 01:27 + 00:50

testing/samples/coronae_heatflux_boris: (69/73)
    Compiling..                               ok        01:50
    Starting..                                ok        00:01
    Running..                                 ok        00:22
    Validating results..                     
----------------------------------------------------------------------
### auto-test failed ###
Failed 5 test(s) out of 73:
CPU time (including compilation): 02:03:28u 07:52s
Total wall-clock time:            02:16:54 = 01:36:19 + 39:57

----------------------------------------------------------------------
The following configuration has been used:
$config = {
            'makefile' => {
                            'CFLAGS_FFTW2' => '',
                            'FSTD_2003' => '-std=f2003',
                            'CFLAGS' => '-DFUNDERSC=1',
                            'LDFLAGS_HELPER' => '-dynamic',
                            'LD_MPI' => '',
                            'FFLAGS_FFTW2' => '',
                            'CFLAGS_DOUBLE' => '-DDOUBLE_PRECISION',
                            'FFLAGS_FFTW3' => '',
                            'CC' => 'mpicc',
                            'FSTD_95' => '-std=f95',
                            'CFLAGS_FFTW3' => '',
                            'FFLAGS' => '-O -O0 -Wall -finit-real=NaN -finit-integer=-2147483648 -g -fbacktrace -fimplicit-none -fcheck=all -ffpe-trap=invalid,zero,overflow',
                            'MAKE_VAR1' => '-j',
                            'LD_FFTW2' => '',
                            'F77' => 'mpif77',
                            'FC' => 'mpif90',
                            'LD_FFTW3' => '',
                            'FFLAGS_DOUBLE' => '-fdefault-real-8 -fdefault-double-8'
                          },
            'runtime' => {
                           'mpiexec' => 'mpiexec',
                           'mpiexec_opts' => '',
                           'mpiexec_opts2' => ''
                         },
            'environment' => {
                               'MODULE_SUFFIX' => '',
                               'MODULE_INFIX' => '_MOD_',
                               'MODULE_PREFIX' => '__'
                             }
          };
Perl version v5.18.2
Sat Sep 22 02:29:58 2018